Hairy marron, Reference genome, PacBio-HiFi, Abdomen
Dataset size is: 30.92 GiB
This dataset is currently under a short embargo period until September 21, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-09-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | Offspring of "Marvin" and "Caralyn" |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1486/20230922_TSI_AGRF_CAGRF230414583_m84073_230913_014831_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | C01 |
| class | Malacostraca |
| collection_date | 2023-04-27 |
| collector | Harriet Mills | Perth Zoo |
| common_name | Hairy marron |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Kym Ottewell | DBCA |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358843 |
| date_of_transfer | 2023-09-22 |
| date_of_transfer_to_archive | 2023-09-25 |
| death_date | 2023-04-27 |
| description | Hairy Marron (Cherax tenuimanus) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 462463.0 |
| family | Parastacidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230913_014831_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230922_TSI_AGRF_CAGRF230414583_m84073_230913_014831_s2 |
| genotypic_sex | Undetermined |
| genus | Cherax |
| health_state | unknown |
| insert_size_range | 13000.0 |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462463 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-08-30 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Juvenile |
| material_conc_ng_ul | 179.0 |
| material_extracted_by | Melissa Millar | DBCA |
| material_extraction_date | 2023-04-27 |
| material_extraction_method | Gentra Puregene kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Decapoda |
| phenotypic_sex | Undetermined |
| phylum | Arthropoda |
| prior_genetics | Microsatellite fragment analysis to determine hybrid status |
| sample_custodian | Kym Ottewell | DBCA |
| sample_id | 102.100.100/460420 |
| sample_quality | Fresh frozen |
| sample_type | Whole organism |
| scientific_name | Cherax tenuimanus |
| scientific_name_authorship | Smith, 1912 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Boomerang Pool, Margaret River, Western Australia |
| species | tenuimanus |
| specimen_id_description | Perth Zoo identifier |
| state_or_region | Western Australia |
| taxon_id | 99755.0 |
| taxonomic_group | Crustacean |
| ticket | BPAOPS-1486 |
| tissue_collection | DBCA Tissue Collection |
| tissue_collection_type | Perth Zoo captive breeding population |
| tissue_number | T15683 |
| tissue_preservation | -80C |
| tissue_preservation_temperature | -80 |
| tissue_type | Abdomen |
| wild_captive | captive |
| work_order | 14052 |