Victorian Grassland Earless Dragon, Reference genome, PacBio-HiFi, fibroblast cells grown from tail tip
Dataset size is: 44.55 GiB
This dataset is currently under a short embargo period until November 1, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-11-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1509/20231031_TSI_AGRF_CAGRF230414583_m84073_231020_065047_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | B01 |
| class | Reptilia |
| collection_date | 2023-02-01 |
| collection_method | hand capture |
| collector | Peter Robertson |
| collector_sample_id | C30353 Zoos Victoria Collection Number |
| common_name | Victorian Grassland Earless Dragon |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Joanna Sumner |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358859 |
| date_of_transfer | 2023-11-02 |
| date_of_transfer_to_archive | 2023-11-03 |
| description | Victorian earless dragon (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 462455.0 |
| family | Agamidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_231020_065047_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20231031_TSI_AGRF_CAGRF230414583_m84073_231020_065047_s2 |
| genus | Tympanocryptis |
| habitat | grassland |
| insert_size_range | 12000.0 |
| institution_name | Museums Victoria (NMV) |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462455 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-09-26 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | sub-adult |
| location_text | West of Melbourne |
| material_conc_ng_ul | 18.0 |
| material_extracted_by | Joanna Sumner |
| material_extraction_date | 2023-06-06 |
| material_extraction_method | Nanobind CCB kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Museums Victoria |
| sample_id | 102.100.100/460413 |
| sample_quality | freshly grown and harvested fibroblast cprimary cells |
| sample_type | fibroblast cells |
| scientific_name | Tympanocryptis pinguicolla |
| scientific_name_authorship | Mitchell, 1948 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | pinguicolla |
| specimen_id | NMVZ48771 |
| specimen_id_description | Museums Victoria Tissue Collection number |
| state_or_region | Victoria |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1509 |
| tissue_collection | Ian Potter Australian Wildlife BioBank |
| tissue_collection_type | Museum |
| tissue_number | NMVZ48771 |
| tissue_preservation | growth medium |
| tissue_type | fibroblast cells grown from tail tip |
| wild_captive | wild |
| work_order | 14052 |