Western ground parrot, Reference genome, PacBio-HiFi, F-kidney-HMWDNA
Dataset size is: 15.50 GiB
This dataset is currently under a short embargo period until July 25, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
Access Control Date | 2024-07-25 |
Access Control Mode | date |
Sequence Data Type | pacbio-hifi |
analysis_software | SMRT Link Analysis |
analysis_software_version | 12.0.0.172289 |
bait_set_name | NA |
bait_set_reference | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1444/20230721_TSI_AGRF_CAGRF230414583_m84073_230713_052805_s1/ |
bioplatforms_project | Threatened Species Initiative |
cell_postion | A01 |
certainty | 1.0 |
class | Aves |
collection_method | Necropsy |
common_name | Western ground parrot |
country | Australia |
data_context | Reference genome |
data_custodian | Matyas Liptovszky |
data_type | PacBio-HiFi |
dataset_id | 102.100.100/358826 |
date_of_transfer | 2023-07-26 |
date_of_transfer_to_archive | 2023-07-26 |
death_date | 2021-04-21 |
description | King Island Brown Thornbill (HiFi Revio) |
dna_treatment | SHEARING |
experimental_design | NA |
facility_project_code | CAGRF230414583 |
facility_sample_id | 460206.0 |
family | Psittaculidae |
fast5_compression | NA |
file_type | BAM |
flowcell_id | m84073_230713_052805_s1 |
flowcell_type | SMRT Cell 25M |
folder_name | 20230721_TSI_AGRF_CAGRF230414583_m84073_230713_052805_s1 |
genus | Pezoporus |
insert_size_range | 15000.0 |
institution_name | Perth Zoo |
library_comments | NA |
library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
library_id | 102.100.100/462244 |
library_index_id | NA |
library_index_id_dual | NA |
library_index_seq_dual | NA |
library_index_sequence | NA |
library_layout | NA |
library_location | AGRF |
library_ng_ul | 250pM |
library_oligo_sequence | NA |
library_oligo_sequence_dual | NA |
library_pcr_cycles | NA |
library_pcr_reps | NA |
library_prep_date | 2023-06-07 |
library_prepared_by | Jack Royle |
library_selection | size fractionation |
library_source | GENOMIC |
library_strategy | WGS |
library_type | PacBio-HiFi |
lifestage | adult |
material_extraction_type | DNA |
metadata_revision_date | 2023-11-30 |
metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
method_of_determination | post mortem |
model_base_caller | NA |
movie_length | 24Hrs |
n_libraries_pooled | 1.0 |
order | Psittaciformes |
phenotypic_sex | female |
phylum | Chordata |
sample_custodian | Perth Zoo |
sample_id | 102.100.100/460206 |
sample_type | tissue |
scientific_name | Pezoporus flaviventris |
sequencing_facility | AGRF |
sequencing_kit_chemistry_version | Revio sequencing plate |
sequencing_model | PacBio Revio |
sequencing_platform | PACBIO_SMRT |
species | flaviventris |
specimen_id | 21F02/B2104156 |
state_or_region | Western Australia |
subspecies | N/A |
taxon_id | 889875.0 |
taxonomic_group | Bird |
ticket | BPAOPS-1444 |
tissue_preservation | Frozen |
tissue_preservation_temperature | -80.0 |
tissue_type | F-kidney-HMWDNA |
work_order | 14052 |