Black-eared miner, Reference genome, PacBio-HiFi, Blood sample
Dataset size is: 8.63 GiB
This dataset is currently under a short embargo period until July 26, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-07-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1445/20230726_TSI_AGRF_CAGRF230414583_m84073_230713_055821_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | B01 |
| certainty | certain |
| class | Aves |
| collection_date | 1998-09-25 |
| collection_method | Mist netting |
| collector | Rohan Clarke |
| collector_sample_id | 052-05118 |
| common_name | Black-eared miner |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Katherine Harrisson |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358819 |
| date_of_transfer | 2023-07-27 |
| date_of_transfer_to_archive | 2023-07-28 |
| description | Black-eared miner (HiFi Revio) |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 462068.0 |
| family | Meliphagidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230713_055821_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230726_TSI_AGRF_CAGRF230414583_m84073_230713_055821_s2 |
| genotypic_sex | female |
| genus | Manorina |
| insert_size_range | 12500.0 |
| institution_name | La Trobe University |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/462068 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-06-07 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Taylorville, site TAY06 |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | genetic |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| sample_custodian | Katherine Harrisson |
| sample_id | 102.100.100/460031 |
| sample_quality | Should be high MW |
| sample_type | Blood sample |
| scientific_name | Manorina melanotis |
| scientific_name_authorship | Wilson, 1911 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Taylorville, South Australia |
| species | melanotis |
| specimen_id | 052-05118 |
| specimen_id_description | Australian Bird and Bat Banding Scheme (ABBBS) |
| state_or_region | South Australia |
| taxon_id | 1931064 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1445 |
| tissue_collection | MFC lab |
| tissue_collection_type | University |
| tissue_number | 052-05118 |
| tissue_preservation | Ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | Blood sample |
| wild_captive | wild |
| work_order | 14052 |