Reference Genome, PacBio-HiFi, Leaf
Dataset size is: 1.07 TiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-08-25 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1317/20220823_TSI_CAGRF220610892_DA191715/408046_TSI_AGRF_DA191715_HiFi_metadata/ |
| cell_postion | D01 |
| class | Magnoliopsida |
| collection_date | 2019-01-01 |
| collector | GP Phillips, J Mallee, D Kelly, J Bragg, S Chen |
| collector_sample_id | 731.0 |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Jason Bragg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358788 |
| dataset_url | Jason Bragg |
| date_of_transfer | 2022-08-25 |
| date_of_transfer_to_archive | 2022-08-30 |
| description | Lenwebbia HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | QAGRF220610892 |
| facility_sample_id | 408046.0 |
| family | Myrtaceae |
| file_type | BAM |
| flowcell_id | DA191715 |
| flowcell_type | SMRTcell 8M |
| folder_name | 20220823_TSI_CAGRF220610892_DA191715 |
| genus | Lenwebbia |
| health_state | No myrtle rust infection |
| insert_size_range | 10-20KB |
| institution_name | Royal Botanic Garden and Domain Trust |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/408046 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 21.0 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2022-07-26 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Limpinwood Nature Reserve |
| material_conc_ng_ul | unknown |
| material_extracted_by | Stephanie Chen |
| material_extraction_date | 2022-01-01 |
| material_extraction_method | Sorbitol wash, CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Myrtales |
| phylum | Streptophyta |
| sample_id | 102.100.100/405733 |
| sample_type | Leaf tissue |
| scientific_name | Lenwebbia sp. Main Range |
| scientific_name_authorship | P.R.Sharpe+ 4877 |
| scientific_name_note | Sharpe, 2007 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Echo Point Lookout on Border Track |
| species | sp. Main Range |
| specimen_id | P2018-0478/1 |
| specimen_id_description | Royal Botanic Garden and Domain Trust living collection identifier. Plant in ex situ collection at Australian Botanic Garden Mount Annan. Databased on the PlantBank database |
| state_or_region | New South Wales |
| taxon_id | 1842758.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1317 |
| tissue_collection | ABG living collection |
| tissue_collection_type | Living collection |
| tissue_number | P2018-0478/1_Lenwebbia |
| tissue_preservation | Liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Leaf |
| wild_captive | wild |
| work_order | 14032 |