Tasmanian scrubtit, Reference genome, PacBio-HiFi, Pooled_heart_kidney
Dataset size is: 936.54 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-07-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open Access |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:16ff9f36-2ebf-4ab1-861e-a21ebd37b9e0 |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1296/20220629_TSI_CAGRF220510523_DA162807/408025_TSI_AGRF_DA162807_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | Low |
| class | Aves |
| collection_date | 2022-04-21 |
| collection_method | Euthanasia |
| collector | TMAG |
| common_name | Tasmanian scrubtit |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358778 |
| date_of_transfer | 2022-07-01 |
| date_of_transfer_to_archive | 2022-07-05 |
| death_date | 2022-04-21 |
| decimal_latitude_public | -42.71 |
| decimal_longitude_public | 147.84 |
| description | Acanthornis magna HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | QAGRF220510523 |
| facility_sample_id | 408025.0 |
| family | Acanthizidae |
| file_type | BAM |
| flowcell_id | DA162807 |
| flowcell_type | SMRTcell 8M |
| folder_name | 20220629_TSI_CAGRF220510523_DA162807 |
| genus | Acanthornis |
| habitat | Rainforest |
| health_state | Healthy |
| insert_size_range | 10-20KB |
| institution_name | University of Sydney |
| latitude | -42.71 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/408025 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 53.0 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2022-06-01 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| longitude | 147.84 |
| material_conc_ng_ul | 189.6 |
| material_extracted_by | Lauren Alexander |
| material_extraction_date | 2022-05-04 |
| material_extraction_method | Circulomics Big Tissue Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | N/A |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/405645 |
| sample_quality | good |
| sample_type | Whole organism |
| scientific_name | Acanthornis magna |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Wielangta Forest |
| species | magna |
| specimen_id | B9548_ST67 |
| specimen_id_description | TMAG ID |
| state_or_region | Tasmania |
| taxon_id | 720576.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1296 |
| tissue_collection | Ross Crates |
| tissue_collection_type | Euthanasia |
| tissue_number | _heart_kidney_pooled |
| tissue_preservation | Flash frozen -80C |
| tissue_preservation_temperature | Flash frozen -80C |
| tissue_type | Pooled_heart_kidney |
| wild_captive | wild |
| work_order | 14029 |