Lister's gecko, Reference genome, PacBio-HiFi, Pooled_heart_kidney_tail_leg
Dataset size is: 697.55 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-06-22 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open Access |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1289/20220621_TSI_CAGRF220510703_DA162797/359703_TSI_AGRF_DA162797_HiFi_metadata/ |
| cell_postion | B01 |
| certainty | High |
| class | Reptillia |
| collection_date | 2021-09-02 |
| collection_method | Euthanasia |
| collector | Claire Ford |
| collector_sample_id | LG282 |
| common_name | Lister's gecko |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358767 |
| date_of_transfer | 2022-06-22 |
| date_of_transfer_to_archive | 2022-06-26 |
| death_date | 2021-09-02 |
| description | Lepidodactylus listeri HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF220510703 |
| facility_sample_id | 359703.0 |
| family | Gekkonidae |
| file_type | BAM |
| flowcell_id | DA162797 |
| flowcell_type | SMRTcell 8M |
| folder_name | 20220621_TSI_CAGRF220510703_DA162797 |
| genus | Lepidodactylus |
| habitat | Rainforest |
| health_state | Poor - severe gout |
| insert_size_range | 10-20KB |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/359703 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 40.0 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2022-05-24 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| location_text | Mosman |
| material_conc_ng_ul | 379.0 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2022-01-18 |
| material_extraction_method | Circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | N/A |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/359889 |
| sample_quality | good |
| sample_type | Whole organism |
| scientific_name | Lepidodactylus listeri |
| scientific_name_authorship | Boulenger |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Taronga Zoo |
| species | listeri |
| specimen_id | LG282 |
| specimen_id_description | Claire Ford captive euthanasia |
| state_or_region | New South Wales |
| taxon_id | 747221.0 |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1289 |
| tissue_collection | Claire Ford |
| tissue_collection_type | Living collection - Zoo |
| tissue_number | LG282_pooled_heart_kidney_tail_leg |
| tissue_preservation | organs flash frozen at -80 and whole body 70% ethanol |
| tissue_preservation_temperature | organs -80, whole body 4 |
| tissue_type | Pooled_heart_kidney_tail_leg |
| wild_captive | captive |
| work_order | 14023 |