Stuttering barred frog, Reference genome, PacBio-HiFi, Pooled_heart_kidney
Dataset size is: 788.70 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-03-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Open Access |
| analysis_software | SMRTtools |
| analysis_software_version | 10.1.0.119588 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1204/2022032_TSI_CAGRF21118894_DA149172/359180_TSI_AGRF_DA149172_HiFi_metadata/ |
| birth_date | 2019-09-23 |
| cell_postion | B01 |
| certainty | Certain |
| class | Amphibia |
| collection_date | 2021-09-22 |
| collection_method | Medical euthanasia |
| collector | Michael Mahoney |
| common_name | Stuttering barred frog |
| data_context | Reference genome |
| data_custodian | Carolyn Hogg |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358762 |
| date_of_transfer | 2022-03-04 |
| date_of_transfer_to_archive | 2022-03-08 |
| death_date | 2021-09-23 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_sample_id | 356780.0 |
| family | Myobatrachidae |
| file_type | BAM |
| flowcell_id | DA149172 |
| flowcell_type | SMRTcell 8M |
| folder_name | 2022032_TSI_CAGRF21118894_DA149172 |
| genus | Mixophyes |
| habitat | Semi-aquatic |
| insert_size_range | 10-20KB |
| institution_name | University of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/359180 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 60ng/uL |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2022-01-16 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| location_text | NSW |
| material_conc_ng_ul | 150.3 |
| material_extracted_by | Simon Tang and Elspeth McLennan |
| material_extraction_date | 2021-12-06 |
| material_extraction_method | Circulomics Kit ("Nanobind Tissue Big DNA Kit v1.0 11/19") |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 30HRS |
| n_libraries_pooled | 1.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/356780 |
| sample_quality | good |
| scientific_name | Mixophyes balbus |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Central Coast Population |
| species | balbus |
| specimen_id | SBF_USYD |
| specimen_id_description | Michael Mahoney wild euthanasia |
| state_or_region | Australia |
| taxon_id | 326987.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1204 |
| tissue_collection | Michael Mahoney |
| tissue_number | SBF_USYD_pooled_heart_kidney |
| tissue_preservation | Flash frozen at -80C |
| tissue_type | Pooled_heart_kidney |
| wild_captive | wild |