green and golden bell frog, Reference Genome, PacBio-HiFi, blood
Dataset size is: 1.08 TiB
This dataset is currently under a short embargo period until July 31, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-07-31 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1194/20220210_TSI_CAGRF21108591_DA136087/359086_TSI_AGRF_DA136087_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | certain |
| class | Amphibia |
| collection_method | Frog was removed from outdoor enclosure by hand |
| collector | Anthony Waddle, University of Melbourne/Macquarie University |
| collector_sample_id | MaleTub17 |
| common_name | green and golden bell frog |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Anthony Waddle |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358759 |
| date_of_transfer | 2022-02-16 |
| date_of_transfer_to_archive | 2022-02-17 |
| decimal_latitude_public | -32.86 |
| decimal_longitude_public | 151.73 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF21108591 |
| facility_sample_id | 359086.0 |
| family | Pelodryadidae |
| file_type | BAM |
| flowcell_id | DA136087 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20220210_TSI_CAGRF21108591_DA136087 |
| genus | Litoria |
| habitat | Waste emplacement dam |
| insert_size_range | 12500.0 |
| institution_name | Macquarie University |
| latitude | -32.86 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/359086 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 90pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2021-12-15 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult organism |
| location_text | Kooragang Island |
| longitude | 151.73 |
| material_extracted_by | Anthony Waddle |
| material_extraction_method | circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | conspicuous sexual characteristics such as nuptual pads and coloured throat patch. |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Anthony Waddle, Rick Shine, Simon Clulow |
| sample_id | 102.100.100/356208 |
| sample_quality | fresh |
| sample_type | Blood |
| scientific_name | Litoria aurea |
| scientific_name_authorship | Lesson, 1829 |
| scientific_name_note | sometimes called Ranoidea aurea |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Kooragang Island |
| species | aurea |
| specimen_id | MQ-MLA017 |
| specimen_id_description | Specimen is a male Litoria aurea from Macquarie University Fauna Park Colony taken from tub 17 in July 2021 |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 312085.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1194 |
| tissue_collection | Litoria aurea colony |
| tissue_collection_type | University |
| tissue_number | MQ-MLA017Blood |
| tissue_preservation | none |
| tissue_preservation_temperature | 23.0 |
| tissue_type | blood |
| wild_captive | captive |
| work_order | 14020 |