Swan Galaxias, Reference Genome, Pacbio HiFi, Fin Clip
Dataset size is: 774.95 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2022-10-08 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | open |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119588 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1144/2021107_TSI_CAGRF21088083_DA110326/358493_TSI_AGRF_DA110326_HiFi_metadata/ |
| cell_postion | B01 |
| certainty | Certain |
| class | Actinopteri |
| collection_date | 2021-08-20 |
| collection_method | Electrofishing |
| collector | Christopher Bassano (IFS) |
| collector_sample_id | Gf44 |
| common_name | Swan Galaxias |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Bruce Deagle |
| data_type | Pacbio HiFi |
| dataset_id | 102.100.100/358755 |
| date_of_transfer | 2021-10-08 |
| date_of_transfer_to_archive | 2021-10-11 |
| dna_treatment | Megaruptor2 - 20kb setting |
| experimental_design | NA |
| facility_project_code | CAGRF21088083 |
| facility_sample_id | 358493.0 |
| family | Galaxiidae |
| file_type | bam |
| flowcell_id | DA110326 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 2021107_TSI_CAGRF21088083_DA110326 |
| genus | Galaxias |
| habitat | Stream |
| insert_size_range | 14115.0 |
| institution_name | CSIRO Australian National Fish Collection (ANFC) |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/358493 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | sheared |
| library_location | AGRF |
| library_ng_ul | 70pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2021-09-16 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | HiFi |
| location_text | Cygnet_River |
| material_conc_ng_ul | 100.0 |
| material_extracted_by | Bruce Deagle |
| material_extraction_date | 2021-08-23 |
| material_extraction_method | NEB Monarch HMW DNA Extraction Kit |
| material_extraction_type | Fin Clip |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Eggs present |
| movie_length | 30hrs |
| n_libraries_pooled | NA |
| order | Galaxiiformes |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | None |
| sample_custodian | Bruce Deagle |
| sample_id | 102.100.100/356398 |
| sample_quality | DNA_Good |
| sample_type | Whole Organism |
| scientific_name | Galaxias fontanus |
| scientific_name_authorship | Fulton, 1978 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | SwanRiver_Translocated |
| species | fontanus |
| specimen_id | GT14814 |
| specimen_id_description | Registered GT number CSIRO Fish Collection |
| state_or_region | Tasmania |
| subspecies | NA |
| taxon_id | 89585.0 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1144 |
| tissue_collection | ANFC |
| tissue_collection_type | ResearchCollection |
| tissue_number | Muscle_GT14814 |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | minus 80C tissue sample and ethanol for fish |
| tissue_type | Fin Clip |
| wild_captive | wild |
| work_order | 14017 |