Murray cray, Reference Genome, Pacbio HiFi, mixed (muscle and gonad)
Dataset size is: 991.47 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-02-02 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1187/20220124_TSI_CAGRF21077760_DA136062/358301_TSI_AGRF_DA136062_HiFi_metadata/ |
| cell_postion | A01 |
| certainty | certain |
| class | Malacostraca |
| collection_date | 2021-09-29 |
| collection_method | Baited hoop net |
| collector | Timothy McGarry |
| common_name | Murray cray |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Chris Austin |
| data_type | Pacbio HiFi |
| dataset_id | 102.100.100/358751 |
| date_of_transfer | 2022-02-02 |
| date_of_transfer_to_archive | 2022-02-04 |
| death_date | 2021-09-30 |
| decimal_latitude_public | -34.77 |
| decimal_longitude_public | 146.57 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | QAGRF21077760 |
| facility_sample_id | 358301.0 |
| family | Parastascidae |
| file_type | BAM |
| flowcell_id | DA136062 |
| flowcell_type | NA |
| folder_name | 20220124_TSI_CAGRF21077760_DA136062 |
| genotypic_sex | NA |
| genus | Euastacus |
| habitat | flowing river |
| health_state | Healthy |
| insert_size_range | 13600.0 |
| institution_name | Deakin University |
| latitude | -34.77 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/358301 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 68.4 |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2021-11-19 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| location_text | Murrumbidgee River, Narrandera |
| longitude | 146.57 |
| material_conc_ng_ul | 25-125 (in several tubes) |
| material_extracted_by | Stella Loke, Deakin University |
| material_extraction_date | 2021-10-07 |
| material_extraction_method | High Salt CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | External morphology and dissection |
| movie_length | 30HRS |
| n_libraries_pooled | NA |
| order | Decapoda |
| phenotypic_sex | male |
| phylum | Arthropoda |
| sample_custodian | Chris Austin |
| sample_id | 102.100.100/356209 |
| sample_quality | High quality from fresh sample |
| sample_type | Tissue sample |
| scientific_name | Euastacus armatus |
| scientific_name_authorship | (von Martens, 1866) |
| scientific_name_note | Parastacidae |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Murrumbidgee River |
| species | armatus |
| specimen_id | DKN.TSI.004 |
| specimen_id_description | Deakin University Genomics Centre |
| state_or_region | New South Wales |
| taxon_id | 72420.0 |
| taxonomic_group | Crustacean |
| ticket | BPAOPS-1187 |
| tissue_collection | DGC |
| tissue_collection_type | University |
| tissue_number | DKN.TSI.004_Mixed |
| tissue_preservation | Circulomics EB buffer |
| tissue_preservation_temperature | 4 degrees C |
| tissue_type | mixed (muscle and gonad) |
| wild_captive | NA |
| work_order | 14014 |