resequencing, Illumina FASTQ
Dataset size is: 71.18 GiB
This dataset is currently under a short embargo period until April 26, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-04-26 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| analysis_software_version | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1584/20240426_TSI_AGRF_22KM53LT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1584 |
| data_context | resequencing |
| data_custodian | Jayson Semmens |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358874 |
| date_of_transfer | 2024-04-26 |
| date_of_transfer_to_archive | 2024-05-10 |
| description | Zearaja maugeana (WGS) |
| facility_project_code | CAGRF24030138 |
| facility_sample_id | 473342_TSI_AGRF |
| file_type | fastq.gz |
| flowcell_id | 22KM53LT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240426_TSI_AGRF_22KM53LT3 |
| genus | Zearaja |
| insert_size_range | 130 - 200 bp |
| library_construction_protocol | IDT xGen cfDNA & FFPE Library Prep |
| library_id | 102.100.100/473342 |
| library_index_id_dual | 7-329 & 5-377 |
| library_index_seq_dual | AAAGATCG-GTTGCCTT |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 3.84 |
| library_pcr_cycles | 12.0 |
| library_prep_date | 2024-04-09 |
| library_prepared_by | AGRF |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_type | illumina-shortread |
| sample_id | 102.100.100/463262 |
| scientific_name | Zearaja maugeana |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP-SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | maugeana |
| specimen_id | HrtgMZ1 |
| ticket | BPAOPS-1584 |
| tissue_number | GT15307_H1987_01 |
| work_order | 14063 |