Genome resequencing, Illumina FASTQ
Dataset size is: 28.95 GiB
This dataset is currently under a short embargo period until November 23, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
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463507_TSI_AGRF_22GHFLLT3_ATCCGG... Metadata Only FASTQ
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-11-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| analysis_software_version | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1524/20231124_TSI_AGRF_CAGRF23091272_22GHFLLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1524 |
| data_context | Genome resequencing |
| data_custodian | Kevin Rowe |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358863 |
| date_of_transfer | 2023-11-24 |
| date_of_transfer_to_archive | 2023-11-27 |
| description | Mastacomys fuscus |
| facility_project_code | CAGRF23091272 |
| facility_sample_id | 15097-31 |
| file_type | fastq.gz |
| flowcell_id | 22GHFLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231124_TSI_AGRF_CAGRF23091272_22GHFLLT3 |
| genus | Mastacomys |
| insert_size_range | 372 bp ± 100 bp |
| library_construction_protocol | IDT xGen cfDNA & FFPE Library Preperation |
| library_id | 102.100.100/463507 |
| library_index_id_dual | IDT8_i7_31 & IDT8_i5_31 |
| library_index_seq_dual | ATCCGGTA-TATCGGTC |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 27.3 |
| library_pcr_cycles | 7.0 |
| library_prep_date | 2023-10-23 |
| library_prepared_by | SW |
| library_source | gDNA |
| library_type | Illumina-shortread |
| sample_id | 102.100.100/462961 |
| scientific_name | Mastacomys fuscus |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP-SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | fuscus |
| specimen_id | C31803 |
| ticket | BPAOPS-1524 |
| tissue_number | C31803 |