Howard River Toadlet, Transcriptome, Illumina FASTQ, Kidney/Gonads
Dataset size is: 7.02 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1488/20230929_TSI_UNSW_22C5YVLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1488 |
| certainty | certain |
| class | Amphibia |
| collection_date | 2023-02-16 |
| collection_method | by hand |
| collector | Renee Catullo, Peter McDonald, Tony Griffiths |
| common_name | Howard River Toadlet |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Renee Catullo |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358840 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-09 |
| death_date | 2023-02-17 |
| decimal_latitude_public | -12.44 |
| decimal_longitude_public | 131.04 |
| description | Transcriptomes: Howard River Toadlet (Uperoleia daviesae), KI Brown Thornbill (Acanthiza pusilla) |
| facility_project_code | Q0011702 |
| facility_sample_id | CAT12320A3 |
| family | Myobatrachidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_TSI_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Uperoleia |
| habitat | sandsheet heath |
| health_state | unknown |
| insert_size_range | 150 PE |
| institution_name | UWA Catullo Lab internal identifier |
| latitude | -12.44 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/462458 |
| library_index_id_dual | UDP0016 |
| library_index_seq_dual | CGGTTACGGC-CTATAGTCTT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.048753084 |
| library_pcr_cycles | 10.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2023-08-23 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult organism |
| location_text | Willard Rd, Shoal Bay, Darwin |
| longitude | 131.04 |
| material_extracted_by | Garvin |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | calling individual |
| n_libraries_pooled | 25.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Renee Catullo |
| sample_id | 102.100.100/460416 |
| sample_quality | sampled for this purpose |
| sample_type | tissue sample |
| scientific_name | Uperoleia daviesae |
| scientific_name_authorship | Young, Tyler & Kent, 2005 |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | daviesae |
| specimen_id | Up1333 |
| specimen_id_description | UWA Catullo Lab internal identifier |
| state_or_region | Northern Territory |
| taxon_id | 1534773.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1488 |
| tissue_collection | UWA Catullo Lab - private |
| tissue_collection_type | university |
| tissue_number | Up1333_K |
| tissue_preservation | "RNA later then -80" |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Kidney/Gonads |
| wild_captive | wild |
| work_order | 14055 |