King Island brown thornbill, Transcriptome, Illumina FASTQ, Brain
Dataset size is: 8.47 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | open |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/62f6a29a-7b0c-4e5c-83ea-0074f99d133b |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1488/20230929_TSI_UNSW_22C5YVLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1488 |
| certainty | high |
| class | Aves |
| collection_method | Dissection |
| collector | Dejan Stojanovic |
| common_name | King Island brown thornbill |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358836 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-09 |
| death_date | 2023-04-06 |
| description | Transcriptomes: Howard River Toadlet (Uperoleia daviesae), KI Brown Thornbill (Acanthiza pusilla) |
| facility_project_code | Q0011702 |
| facility_sample_id | PEE12354A2 |
| family | Acanthizidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_TSI_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Acanthiza |
| habitat | Forest |
| health_state | unknown |
| insert_size_range | 150 PE |
| institution_name | Australian National University |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/462446 |
| library_index_id_dual | UDP0010 |
| library_index_seq_dual | AGTCAGACGA-TGTCGCTGGT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 3.5068370393 |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2023-08-26 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult |
| material_conc_ng_ul | 1619.6 |
| material_extracted_by | Lauren Alexander |
| material_extraction_date | 2023-05-25 |
| material_extraction_method | Qiagen Rneasy tissue kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection |
| n_libraries_pooled | 25.0 |
| order | Passeriformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/460409 |
| sample_quality | high |
| sample_type | Organ |
| scientific_name | Acanthiza pusilla |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | King Island |
| species | pusilla |
| specimen_id | B974_KIBT |
| specimen_id_description | ANU field collection |
| state_or_region | TAS |
| subspecies | magnirostris |
| taxon_id | 117193.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1488 |
| tissue_collection | Australian National University |
| tissue_collection_type | Dissection |
| tissue_number | B974_KIBT_brain |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Brain |
| wild_captive | wild |
| work_order | 14055 |