there is no common name listed, Reference genome, Illumina FASTQ, root

Euphorbiaceae, Fontainea Coffs harbour, UniSC FC0001, Plant, Project Lead: Ton Stewart

Dataset size is: 5.23 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2024-03-22
Access Control Mode date
Sequence Data Type illumina-shortread
access_rights No restrictions
analysis_software bcl2fastq
analysis_software_version 1.37.0
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1371/20230310_TSI_UNSW_HHFYHAFX5/
bioplatforms_project Threatened Species Initiative
ccg_jira_ticket BPAOPS-1371
certainty NA
class Equisetopsida
collection_method snap freeze in liquid nitrogen from live plant
collector Ton Stewart, University of the Sunshine Coast
common_name there is no common name listed
country Australia
data_context Reference genome
data_custodian Ton Stewart
data_type Illumina FASTQ
dataset_id 102.100.100/358812
date_of_transfer 2023-03-23
date_of_transfer_to_archive 2023-03-24
description Fontainea transcriptomes
download researcher informed
facility_project_code Q0010583
facility_sample_id STE11778A2
family Euphorbiaceae
file_type fastq
flowcell_id HHFYHAFX5
flowcell_type NextSeq Mid Output
folder_name 20230310_TSI_UNSW_HHFYHAFX5
genotypic_sex NA
genus Fontainea
habitat rain forest
health_state healthy young plant
insert_size_range 75bp PE
institution_name University of the Sunshine Coast
library_construction_protocol TruSeq Stranded Total RNA with Ribo-Zero Plant
library_id 102.100.100/460861
library_index_id 008B IDT
library_index_id_dual 008B IDT
library_index_seq CATAATAC
library_index_seq_dual CGTTAGAA
library_layout paired end
library_location Ramaciotti Centre for Genomics
library_ng_ul 12.7
library_pcr_cycles 11.0
library_pcr_reps 1.0
library_prep_date 2023-02-27
library_prepared_by Ramaciotti Centre for Genomics
library_selection RANDOM
library_source TRANSCRIPTOMIC
library_strategy RNA-seq
library_type Illumina-transcriptomics
location_text only two sites just north of Coffs Harbour on the NSW mid-north coast, Boambee Valley, along the coastal foothills to Coffs Creek, the Korora Basin
material_extracted_by Ton Stewart
material_extraction_type RNA
metadata_revision_date 2023-11-30
metadata_revision_filename 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
method_of_determination NA
n_libraries_pooled 3.0
order Malpighiales
phenotypic_sex NA
phylum Streptophyta
sample_custodian Ton Stewart, Gabe Conroy
sample_id 102.100.100/458824
sample_quality don't know yet
sample_type tissue sample
scientific_name Fontainea Coffs harbour
scientific_name_authorship A.S.Benwell 341
sequencing_facility UNSW
sequencing_model Illumina NextSeq 550
sequencing_platform ILLUMINA
species Coffs harbour
specimen_id UniSC FC0001
specimen_id_description UniSC is where the plant propagate, FC is Fontainea Coffs Harbour, number is plant number
state_or_region New South Wales
subspecies None
taxon_id NSW1102027
taxonomic_group Plant
ticket BPAOPS-1371
tissue_collection Botany
tissue_collection_type living collection
tissue_number UniSC FC0001_root1
tissue_preservation frozen
tissue_preservation_temperature -80C
tissue_type root
work_order 14045