Blue-tailed skink, Transcriptome, Illumina FASTQ, liver

Scincidae, Cryptoblepharus egeriae, BTS541, Reptile, Project Lead: Carolyn Hogg

Dataset size is: 13.35 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2023-04-12
Access Control Mode date
Sequence Data Type illumina-shortread
access_rights Open Access
analysis_software bcl2fastq2
analysis_software_version v2.20
ancillary_notes NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1221/20220408_TSI_UNSW_HY3M3DRXY/
ccg_jira_ticket BPAOPS-1221
cell_postion N/A
certainty High
class Reptilia
collection_date 2021-11-17
collection_method Euthanasia
collector Claire Ford
collector_sample_id BTS541
common_name Blue-tailed skink
country Australia
data_context Transcriptome
data_custodian Carolyn Hogg
data_type Illumina FASTQ
dataset_id 102.100.100/358770
date_of_transfer 2022-04-12
date_of_transfer_to_archive 2022-04-13
death_date 2021-11-17
dna_treatment N/A
experimental_design N/A
facility_project_code Q0008217
facility_sample_id PEE10410A8
family Scincidae
file_type fastq.gz
flowcell_id HY3M3DRXY
flowcell_type NovaSeq S1
folder_name 20220408_TSI_UNSW_HY3M3DRXY
genotypic_sex Male
genus Cryptoblepharus
habitat Forest
health_state Poor - gout
insert_size_range 100bp PE
institution_name The University of Sydney
library_comments N/A
library_construction_protocol Illumina mRNA prep ligation
library_id 102.100.100/359721
library_index_id UDP0184
library_index_seq ATCCAGGTAT-CAACGTCAGC
library_layout Paired end
library_location Ramaciotti Centre for Genomics
library_ng_ul 7.52
library_pcr_cycles 12.0
library_pcr_reps 1.0
library_prep_date 2022-03-31
library_prepared_by Ramaciotti Centre for Genomics
library_selection PolyA
library_source TRANSCRIPTOMIC
library_strategy RNA-Seq
library_type Illumina-transcriptomics
lifestage adult
location_text Mosman
material_conc_ng_ul 961.0
material_extracted_by Emma Peel
material_extraction_date 2022-01-18
material_extraction_method Qiagen Rneasy mini kit
material_extraction_type RNA
metadata_revision_date 2024-08-28
metadata_revision_filename 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
method_of_determination Dissection
movie_length N/A
n_libraries_pooled 13.0
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics N/A
sample_custodian Carolyn Hogg
sample_id 102.100.100/359899
sample_quality good
sample_type Whole organism
scientific_name Cryptoblepharus egeriae
scientific_name_authorship Boulenger
sequencing_facility UNSW
sequencing_kit_chemistry_version NovaSeq v1.5
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
source_population Taronga Zoo
species egeriae
specimen_id BTS541
specimen_id_description Claire Ford captive euthanasia
state_or_region New South Wales
taxon_id 2509230.0
taxonomic_group Reptile
ticket BPAOPS-1221
tissue_collection Claire Ford
tissue_collection_type Living collection - Zoo
tissue_number BTS541_liver
tissue_preservation organs fash frozen at -80
tissue_preservation_temperature -80.0
tissue_type liver
wild_captive captive
work_order 14025