Blue-tailed skink, Transcriptome, Illumina FASTQ, liver
Dataset size is: 13.35 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-04-12 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open Access |
| analysis_software | bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1221/20220408_TSI_UNSW_HY3M3DRXY/ |
| ccg_jira_ticket | BPAOPS-1221 |
| cell_postion | N/A |
| certainty | High |
| class | Reptilia |
| collection_date | 2021-11-17 |
| collection_method | Euthanasia |
| collector | Claire Ford |
| collector_sample_id | BTS541 |
| common_name | Blue-tailed skink |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358770 |
| date_of_transfer | 2022-04-12 |
| date_of_transfer_to_archive | 2022-04-13 |
| death_date | 2021-11-17 |
| dna_treatment | N/A |
| experimental_design | N/A |
| facility_project_code | Q0008217 |
| facility_sample_id | PEE10410A8 |
| family | Scincidae |
| file_type | fastq.gz |
| flowcell_id | HY3M3DRXY |
| flowcell_type | NovaSeq S1 |
| folder_name | 20220408_TSI_UNSW_HY3M3DRXY |
| genotypic_sex | Male |
| genus | Cryptoblepharus |
| habitat | Forest |
| health_state | Poor - gout |
| insert_size_range | 100bp PE |
| institution_name | The University of Sydney |
| library_comments | N/A |
| library_construction_protocol | Illumina mRNA prep ligation |
| library_id | 102.100.100/359721 |
| library_index_id | UDP0184 |
| library_index_seq | ATCCAGGTAT-CAACGTCAGC |
| library_layout | Paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 7.52 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2022-03-31 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult |
| location_text | Mosman |
| material_conc_ng_ul | 961.0 |
| material_extracted_by | Emma Peel |
| material_extraction_date | 2022-01-18 |
| material_extraction_method | Qiagen Rneasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-08-28 |
| metadata_revision_filename | 20240829_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | N/A |
| n_libraries_pooled | 13.0 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | N/A |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/359899 |
| sample_quality | good |
| sample_type | Whole organism |
| scientific_name | Cryptoblepharus egeriae |
| scientific_name_authorship | Boulenger |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Taronga Zoo |
| species | egeriae |
| specimen_id | BTS541 |
| specimen_id_description | Claire Ford captive euthanasia |
| state_or_region | New South Wales |
| taxon_id | 2509230.0 |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1221 |
| tissue_collection | Claire Ford |
| tissue_collection_type | Living collection - Zoo |
| tissue_number | BTS541_liver |
| tissue_preservation | organs fash frozen at -80 |
| tissue_preservation_temperature | -80.0 |
| tissue_type | liver |
| wild_captive | captive |
| work_order | 14025 |