Yarra cray, Resequencing, Illumina FASTQ, Muscle

Parastascidae, Euastacus yarraensis, DKN.TSI.047, Crustacean, Project Lead: Chris Austin

Dataset size is: 18.64 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2023-02-02
Access Control Mode date
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url NA
analysis_software Bcl2Fastq2
analysis_software_version v2.20
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1186/20220125_TSI_UNSW_HNNLWDRXY/
ccg_jira_ticket BPAOPS-1186
cell_postion n/a
certainty Not determined
class Malacostraca
collection_date 1994-06-03
collection_method Turn rocks
collector L. Avery
collector_sample_id CA10_0421_EYA
common_name Yarra cray
country Australia
data_context Resequencing
data_custodian Chris Austin
data_type Illumina FASTQ
dataset_id 102.100.100/358757
date_of_transfer 2022-02-02
date_of_transfer_to_archive 2022-02-02
decimal_latitude_public 23
decimal_longitude_public 23
dna_treatment n/a
facility_project_code Q0006750
facility_sample_id LEE9810A38
family Parastascidae
file_type fastq.gz
flowcell_id HNNLWDRXY
flowcell_type NovaSeq SP
folder_name 20220125_TSI_UNSW_HNNLWDRXY
genotypic_sex Not determined
genus Euastacus
habitat River
health_state Healthy
insert_size_range 150bp PE
institution_name Deakin University
latitude 23
library_construction_protocol Illumina DNA Prep
library_id 102.100.100/358722
library_index_id 003C-Nextera_UDI_SetD_C03_UDP0307
library_layout paired end
library_location Ramaciotti Centre for Genomics
library_ng_ul 0.07
library_oligo_sequence CACCTAGCAC-TGCTGGACAT
library_pcr_cycles 12.0
library_pcr_reps 1.0
library_prep_date 2022-02-17
library_prepared_by Ramaciotti Centre for Genomics
library_selection RANDOM
library_source GENOMIC
library_strategy Illumina DNA Prep
library_type WGS
lifestage adult
location_text Stephenson Falls, Gellibrand River
longitude 23
material_conc_ng_ul 0.69
material_extracted_by Yin Peng Lee, Deakin University
material_extraction_date 2021-06-18
material_extraction_method SDS-Chloroform (https://doi.org/10.1093/mollus/66.4.573)
material_extraction_type DNA
metadata_revision_date 2023-11-30
metadata_revision_filename 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
method_of_determination Not determined
movie_length n/a
n_libraries_pooled 50.0
order Decapoda
phenotypic_sex not determined
phylum Arthropoda
prior_genetics Allozymes; Avery and Austin, 1997 Mem. Mus. Vic. 56:543-555
sample_custodian Chris Austin
sample_id 102.100.100/356627
sample_quality Suspect some DNA degradation
sample_type Tissue sample
scientific_name Euastacus yarraensis
scientific_name_authorship (McCoy, 1888)
scientific_name_note NA
sequencing_facility UNSW
sequencing_kit_chemistry_version NovaSeq v1.5
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
source_population NA
species yarraensis
specimen_id DKN.TSI.047
specimen_id_description Deakin University Genomics Centre
state_or_region Victoria
subspecies NA
taxon_id 72429.0
taxonomic_group Crustacean
ticket BPAOPS-1186
tissue_collection DGC
tissue_collection_type University
tissue_number DKN.TSI.047Muscle
tissue_preservation ethanol
tissue_preservation_temperature Room Temp.
tissue_type Muscle
wild_captive wild
work_order 14018