Yarra cray, Resequencing, Illumina FASTQ, Muscle
Dataset size is: 18.64 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-02-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | Bcl2Fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1186/20220125_TSI_UNSW_HNNLWDRXY/ |
| ccg_jira_ticket | BPAOPS-1186 |
| cell_postion | n/a |
| certainty | Not determined |
| class | Malacostraca |
| collection_date | 1994-06-03 |
| collection_method | Turn rocks |
| collector | L. Avery |
| collector_sample_id | CA10_0421_EYA |
| common_name | Yarra cray |
| country | Australia |
| data_context | Resequencing |
| data_custodian | Chris Austin |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358757 |
| date_of_transfer | 2022-02-02 |
| date_of_transfer_to_archive | 2022-02-02 |
| decimal_latitude_public | 23 |
| decimal_longitude_public | 23 |
| dna_treatment | n/a |
| facility_project_code | Q0006750 |
| facility_sample_id | LEE9810A38 |
| family | Parastascidae |
| file_type | fastq.gz |
| flowcell_id | HNNLWDRXY |
| flowcell_type | NovaSeq SP |
| folder_name | 20220125_TSI_UNSW_HNNLWDRXY |
| genotypic_sex | Not determined |
| genus | Euastacus |
| habitat | River |
| health_state | Healthy |
| insert_size_range | 150bp PE |
| institution_name | Deakin University |
| latitude | 23 |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 102.100.100/358722 |
| library_index_id | 003C-Nextera_UDI_SetD_C03_UDP0307 |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 0.07 |
| library_oligo_sequence | CACCTAGCAC-TGCTGGACAT |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2022-02-17 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Illumina DNA Prep |
| library_type | WGS |
| lifestage | adult |
| location_text | Stephenson Falls, Gellibrand River |
| longitude | 23 |
| material_conc_ng_ul | 0.69 |
| material_extracted_by | Yin Peng Lee, Deakin University |
| material_extraction_date | 2021-06-18 |
| material_extraction_method | SDS-Chloroform (https://doi.org/10.1093/mollus/66.4.573) |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Not determined |
| movie_length | n/a |
| n_libraries_pooled | 50.0 |
| order | Decapoda |
| phenotypic_sex | not determined |
| phylum | Arthropoda |
| prior_genetics | Allozymes; Avery and Austin, 1997 Mem. Mus. Vic. 56:543-555 |
| sample_custodian | Chris Austin |
| sample_id | 102.100.100/356627 |
| sample_quality | Suspect some DNA degradation |
| sample_type | Tissue sample |
| scientific_name | Euastacus yarraensis |
| scientific_name_authorship | (McCoy, 1888) |
| scientific_name_note | NA |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| species | yarraensis |
| specimen_id | DKN.TSI.047 |
| specimen_id_description | Deakin University Genomics Centre |
| state_or_region | Victoria |
| subspecies | NA |
| taxon_id | 72429.0 |
| taxonomic_group | Crustacean |
| ticket | BPAOPS-1186 |
| tissue_collection | DGC |
| tissue_collection_type | University |
| tissue_number | DKN.TSI.047Muscle |
| tissue_preservation | ethanol |
| tissue_preservation_temperature | Room Temp. |
| tissue_type | Muscle |
| wild_captive | wild |
| work_order | 14018 |