green and golden bell frog, Reference Genome, Illumina FASTQ, blood
Dataset size is: 108.78 GiB
This dataset is currently under a short embargo period until July 31, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-07-31 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | No restrictions |
| analysis_software | NovaSeq Control Software (NCS); Real Time Analysis (RTA); bcl2fastq |
| analysis_software_version | v1.7.0; v3.4.4;2.20.0.422 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1134/20210927_TSI_AGRF_HNCMHDSX2/ |
| ccg_jira_ticket | BPAOPS-1134 |
| certainty | certain |
| class | Amphibia |
| collection_method | Frog was removed from outdoor enclosure by hand |
| collector | Anthony Waddle, University of Melbourne/Macquarie University |
| collector_sample_id | MaleTub17 |
| common_name | green and golden bell frog |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Anthony Waddle |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358750 |
| date_of_transfer | 2021-09-27 |
| date_of_transfer_to_archive | 2021-09-28 |
| decimal_latitude_public | -32.86 |
| decimal_longitude_public | 151.73 |
| description | NovaSeq 6000; Illumina DNA PCR-Free Prep; Dataset ID 358750 |
| facility_project_code | CAGRF21077736 |
| family | Pelodryadidae |
| file_type | fastq.gz |
| flowcell_id | HNCMHDSX2 |
| flowcell_type | S4 |
| folder_name | 20210927_TSI_AGRF_HNCMHDSX2 |
| genus | Litoria |
| habitat | Waste emplacement dam |
| insert_size_range | 450.0 |
| institution_name | Macquarie University |
| latitude | -32.86 |
| library_construction_protocol | Illumina DNA PCR-Free Prep |
| library_id | 102.100.100/358300 |
| library_index_id | UDP0046-F & UDP0046-R |
| library_index_seq | AGATCCATTA-TGGTAGAGAT |
| library_layout | PE |
| library_pcr_cycles | 0.0 |
| library_type | Reference genome |
| lifestage | adult organism |
| location_text | Kooragang Island |
| longitude | 151.73 |
| material_extracted_by | Anthony Waddle |
| material_extraction_method | circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | conspicuous sexual characteristics such as nuptual pads and coloured throat patch. |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Anthony Waddle, Rick Shine, Simon Clulow |
| sample_id | 102.100.100/356208 |
| sample_quality | fresh |
| sample_type | Blood |
| scientific_name | Litoria aurea |
| scientific_name_authorship | Lesson, 1829 |
| scientific_name_note | sometimes called Ranoidea aurea |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | v1.5 300 cycles |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| source_population | Kooragang Island |
| species | aurea |
| specimen_id | MQ-MLA017 |
| specimen_id_description | Specimen is a male Litoria aurea from Macquarie University Fauna Park Colony taken from tub 17 in July 2021 |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 312085.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1134 |
| tissue_collection | Litoria aurea colony |
| tissue_collection_type | University |
| tissue_number | MQ-MLA017Blood |
| tissue_preservation | none |
| tissue_preservation_temperature | 23.0 |
| tissue_type | blood |
| wild_captive | captive |
| work_order | 14013 |