Reference genome (HiC), Illumina-HiC

408045 Clitoria ternatea

Dataset size is: 100.69 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2023-07-13
Access Control Mode date
Sequence Data Type illumina-hic
analysis_software Bcl2Fastq
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/genomics-hi-c/BPAOPS-1309/20220711_TSI_BRF_HG5YLDMXY/
ccg_jira_ticket BPAOPS-1309
data_context Reference genome (HiC)
data_custodian Carolyn Hogg
data_type Illumina-HiC
dataset_id 102.100.100/358787
date_of_transfer 2022-07-13
date_of_transfer_to_archive 2022-08-09
description Hi-C multiple species
dna_treatment FA crosllinking restriction enzymes and sonication
download researcher informed
experimental_design Arima HiC 2.0 single index
facility_project_code BRF
facility_sample_id 408045_AusARG_BRF_XXXXX_GTGAAA
file_type FASTQ
flowcell_id HG5YLDMXY
flowcell_type Novaseq S2
folder_name 20220711_TSI_BRF_HG5YLDMXY
genus Clitoria
insert_size_range 150bp PE
library_comments Concentration and size was assesd by Bioanalyzer and Qubit
library_construction_protocol Arima HiC 2.0
library_id 408045
library_index_id Index_19
library_index_seq GTGAAA
library_layout paired end
library_location Freezer at BRF
library_ng_ul 1.6
library_oligo_sequence GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAA(AT)CTCGTATGCCGTCTTCTGCTTG
library_pcr_cycles 6
library_pcr_reps 1
library_prep_date 2022-06-30
library_prepared_by Max Nekrasov
library_selection Restriction Digest
library_source GENOMIC
library_strategy Hi-C
library_type Illumina-HiC
n_libraries_pooled 6
sample_id 102.100.100/405660
sequencing_facility BRF
sequencing_kit_chemistry_version NovaSeq v1.5
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
species ternatea
specimen_id UQ_CT_SEQ001.3
ticket BPAOPS-1309
tissue_number UQ_CT_SEQ001.3_shoots
work_order 13045