Spidery wattle/Balcanoona wattle, Population Genetics, Illumina FASTQ, Leaf
Dataset size is: 159.24 GiB
Data and Resources
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358810_TSI_AGRF_H73YHDRX3_CTTGTA... Metadata Only FASTQ
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358810_TSI_AGRF_CAGRF221213132_H... Metadata Only TAR
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358810_TSI_AGRF_H73YHDRX3_CTTGTA... Metadata Only FASTQ
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TSI_AGRF_CAGRF221213132_H73YHDRX... Metadata Only XLSX
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358810_TSI_AGRF_H73YHDRX3_GCCAAT... Metadata Only FASTQ
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358810_TSI_AGRF_H73YHDRX3_GCCAAT... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-04-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | location information |
| associated_media | photo |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1373/20230411_TSI_AGRF_CAGRF221213132_H73YHDRX3/ |
| bioplatforms_project | Threatened Species Initiative |
| bpa_dataset_id | 102.100.100/358810 |
| class | Magnoliopsida |
| collection_date | 2022-11-17 |
| collection_method | Removal of leaves from living plant, and storing on silica gel. Refer to methods in https://doi.org/10.3390/d12080381 |
| collector | Chelsea Hampel/ Colette Blyth, University of Adelaide |
| collector_sample_id | 22_HYB_HUT_18 |
| common_name | Spidery wattle/Balcanoona wattle |
| country | Australia |
| data_context | Population Genetics |
| data_custodian | Chelsea Hampel/ Colette Blyth, University of Adelaide |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358810 |
| dataset_url | Chelsea Hampel/ Colette Blyth |
| date_of_transfer | 2023-04-12 |
| date_of_transfer_to_archive | 2023-04-12 |
| description | Acacia ddRAD |
| experimental_design | PstI & MseI |
| facility_project_code | CAGRF221213132 |
| family | Leguminosae |
| flowcell_id | H73YHDRX3 |
| flowcell_type | SP 300 |
| folder_name | 20230411_TSI_AGRF_CAGRF221213132_H73YHDRX3 |
| genotypic_sex | Not determined |
| genus | Acacia |
| habitat | Arid, mounatinous |
| health_state | None |
| insert_size_range | 280-342 |
| institution_name | University of Adelaide |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2023-03-31 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | juvenile |
| location_text | Arkaroola sanctuary. ~3km south of Arkaroola village |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 2.0 |
| order | Fabales |
| phenotypic_sex | not determined |
| phylum | Spermatophyta |
| sample_custodian | Chelsea Hampel/ Colette Blyth, University of Adelaide |
| sample_quality | Good |
| sample_type | Leaf tissue |
| scientific_name | Acacia araneosa/ Acacia rivalis hybrid |
| scientific_name_authorship | D.J.E. Whibley 1976 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | araneosa/ rivalis hybrid |
| specimen_id_description | University of adelaide - Advanced DNA, Identification and Forensic Facility internal identifier |
| state_or_region | South Australia |
| taxon_id | 1174718.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1373 |
| tissue_collection | Silica gel |
| tissue_collection_type | University |
| tissue_preservation | Silica gel |
| tissue_preservation_temperature | Room Temperature |
| tissue_type | Leaf |
| work_order | 14044 |