Prostrate flame pea, Population Genetics, Illumina FASTQ, Leaf
Dataset size is: 114.73 GiB
Data and Resources
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358809_HTF5VDRX2_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_TGACCA_L001_R2.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_ACAGTG_L001_R2.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_GTGAAA_L001_R2.fastq.gz Metadata Only FASTQ
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358809_HTF5VDRX2_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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TSI_AGRF_HTF5VDRX2_metadata_358809.xlsx Metadata Only XLSX
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358809_HTF5VDRX2_CTTGTA_L001_R2.fastq.gz Metadata Only FASTQ
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358809_TSI_AGRF_CAGRF221112610_H... Metadata Only TAR
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-02-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | Location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://id.biodiversity.org.au/node/apni/2898307 |
| associated_media | None |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1359/20230202_TSI_AGRF_CAGRF221112610_HTF5VDRX2/ |
| bioplatforms_project | Threatened Species Initiative |
| bpa_dataset_id | 102.100.100/358809 |
| certainty | NA |
| class | Magnoliopsida |
| collection_date | 2021-01-01 |
| collection_method | Leaves collected from wild adult plants |
| collector | Rachel Binks, Andrew Crawford |
| collector_sample_id | RB176 |
| common_name | Prostrate flame pea |
| country | Australia |
| data_context | Population Genetics |
| data_custodian | Rachel Binks |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358809 |
| dataset_url | Rachel Binks |
| date_of_transfer | 2023-02-06 |
| date_of_transfer_to_archive | 2023-02-07 |
| description | CAGRF221112610 ddRAD Chorizema humile (dataset 358809) |
| experimental_design | PstI & HpyCH4IV |
| facility_project_code | CAGRF221112610 |
| family | Fabaceae |
| flowcell_id | HTF5VDRX2 |
| flowcell_type | SP 300 |
| folder_name | /20230202_TSI_AGRF_CAGRF221112610_HTF5VDRX2 |
| genotypic_sex | NA |
| genus | Chorizema |
| health_state | Healthy |
| insert_size_range | 280-375 |
| institution_name | Dept of Biodiversity, Conservation and Attractions (DBCA) |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2023-01-11 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | adult plant |
| location_text | Moonyoonooka |
| material_conc_ng_ul | 170.0 |
| material_extracted_by | Nicola Delnevo |
| material_extraction_date | 2021-01-01 |
| material_extraction_method | Standard CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 4.0 |
| order | Fabales |
| phenotypic_sex | NA |
| phylum | Magnoliophyta |
| sample_custodian | Rachel Binks |
| sample_quality | Good |
| sample_type | Tissue sample |
| scientific_name | Chorizema humile |
| scientific_name_authorship | Turcz. |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | humile |
| specimen_id_description | Initial letter denotes tissue source (Adult v Seedling); subsequent numbers denote DBCA population identifiers + plant number |
| state_or_region | Western Australia |
| taxon_id | 3907534_GBIFDatabase |
| taxonomic_group | Plant |
| ticket | BPAOPS-1359 |
| tissue_collection_type | Living collection |
| tissue_preservation | silica |
| tissue_preservation_temperature | Room temperature |
| tissue_type | Leaf |
| wild_captive | natural population |
| work_order | 14041 |