Eastern Chestnust Mouse, Population Genetics, Illumina FASTQ, Tissue sample
Dataset size is: 109.83 GiB
Data and Resources
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358808_TSI_AGRF_CAGRF220811739_H... Metadata Only TAR
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358808_HVLNTDRX2_GTGAAA_L002_R2.fastq.gz Metadata Only FASTQ
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358808_HVLNTDRX2_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358808_HVLNTDRX2_ACAGTG_L002_R2.fastq.gz Metadata Only FASTQ
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358808_HVLNTDRX2_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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TSI_AGRF_HVLNTDRX2_metadata_358808.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-02-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1358/20230203_TSI_AGRF_CAGRF220811739_HVLNTDRX2/ |
| bioplatforms_project | Threatened Species Initiative |
| bpa_dataset_id | 102.100.100/358808 |
| class | Mammalia |
| collection_date | 2005-08-18 |
| common_name | Eastern Chestnust Mouse |
| country | Australia |
| data_context | Population Genetics |
| data_custodian | Linda Neaves |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358808 |
| dataset_url | Linda Neaves |
| date_of_transfer | 2023-02-06 |
| date_of_transfer_to_archive | 2023-02-07 |
| decimal_latitude_public | -27.456667 |
| decimal_longitude_public | 152.207222 |
| description | CAGRF220811739 ddRAD eastern chestnut mouse (dataset 358808) |
| experimental_design | PstI & HpyCH4IV |
| facility_project_code | CAGRF220811739 |
| family | Muridae |
| flowcell_id | HVLNTDRX2 |
| flowcell_type | SP 300 |
| folder_name | 20230203_TSI_AGRF_CAGRF220811739_HVLNTDRX2 |
| genus | Pseudomys |
| insert_size_range | 280-375 |
| institution_name | QUEENSLAND_MUSEUM |
| latitude | -27.456667 |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2023-01-19 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| location_text | Helidon Hills (Finch Property) |
| longitude | 152.207222 |
| material_conc_ng_ul | 46.1 |
| material_extracted_by | Kai Yoshida Dewar |
| material_extraction_date | 2022-09-30 |
| material_extraction_method | NEB Monarch Genomic DNA Purification Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 2.0 |
| order | Rodentia |
| phylum | Chordata |
| sample_custodian | Queensland_Museum |
| sample_type | tissue |
| scientific_name | Pesudomys gracilicaudatus |
| scientific_name_authorship | Gould, 1845 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | gracilicaudatus |
| specimen_id_description | ANU-CEG-internal_identifier |
| state_or_region | South East Queensland |
| taxon_id | 442610.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1358 |
| tissue_collection | Museum_sample |
| tissue_collection_type | Museum_sample |
| tissue_preservation | Ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | Tissue sample |
| work_order | 14035 |