Scrubtit, Population Genetics, Illumina FASTQ, Blood in EtOh
Dataset size is: 109.03 GiB
Data and Resources
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358804_HVLNTDRX2_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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358804_HVLNTDRX2_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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TSI_AGRF_HVLNTDRX2_metadata_358804.xlsx Metadata Only XLSX
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358804_TSI_AGRF_CAGRF220911987_H... Metadata Only TAR
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358804_HVLNTDRX2_GCCAAT_L002_R2.fastq.gz Metadata Only FASTQ
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358804_HVLNTDRX2_CTTGTA_L002_R2.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2024-02-09 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | Location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/eb212e61-ebc3-4924-86fd-94b1b56c001f |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1360/20230203_TSI_AGRF_CAGRF220911987_HVLNTDRX2/ |
| bioplatforms_project | Threatened Species Initiative |
| bpa_dataset_id | 102.100.100/358804 |
| certainty | 60.0 |
| class | Aves |
| collection_date | 2022-04-12 |
| collector | Catherine Young |
| common_name | Scrubtit |
| country | Australia |
| data_context | Population Genetics |
| data_custodian | Ross Crates |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358804 |
| dataset_url | Ross Crates |
| date_of_transfer | 2023-02-09 |
| date_of_transfer_to_archive | 2023-02-14 |
| decimal_latitude_public | -41.1273 |
| decimal_longitude_public | 144.9611 |
| description | CAGRF220911987 ddRAD KI Scrubtit (dataset 358804) |
| experimental_design | EcoRI & HpyCH4IV |
| facility_project_code | CAGRF220911987 |
| family | Acanthizidae |
| flowcell_id | HVLNTDRX2 |
| flowcell_type | SP 300 |
| folder_name | 20230203_TSI_AGRF_CAGRF220911987_HVLNTDRX2 |
| genotypic_sex | male |
| genus | Acanthornis |
| habitat | Wet forest |
| health_state | released live and healthy |
| insert_size_range | 280-342 |
| institution_name | ANU_FENNER |
| latitude | -41.1273 |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2023-01-19 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | adult organism |
| location_text | Sumac |
| longitude | 144.9611 |
| material_conc_ng_ul | 108.0 |
| material_extracted_by | Daniel Gautschi |
| material_extraction_date | 2022-08-18 |
| material_extraction_method | New England Biolabs Genomic DNA extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | morphometrics_guess |
| n_libraries_pooled | 2.0 |
| order | Passeriformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | None |
| sample_custodian | ANU_Linda_Neaves |
| sample_type | tissue |
| scientific_name | Acanthornis magna magna |
| scientific_name_authorship | Gould, 1855 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Central North |
| species | magna |
| specimen_id_description | ANU-DBRG-internal_identifier |
| state_or_region | Tasmania |
| subspecies | magna |
| taxon_id | 720576.0 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1360 |
| tissue_collection | Field_sample |
| tissue_collection_type | wild_living_sample |
| tissue_preservation | Ethanol |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Blood in EtOh |
| wild_captive | wild |
| work_order | 14036 |