Matchstick banksia, Population genetics, Illumina FASTQ, Leaf
Dataset size is: 49.93 GiB
Data and Resources
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358776_HF2M3DRX2_CGATGT_L002_R1.fastq.gz Metadata Only FASTQ
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TSI_NGS_HF2M3DRX2_library_metada... Metadata Only XLSX
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358776_HF2M3DRX2_CGATGT_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_AGTCAA_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_CAGATC_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_AGTTCC_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_AGTCAA_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_AGTTCC_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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358776_HF2M3DRX2_CAGATC_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-07-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | Location information restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://id.biodiversity.org.au/node/apni/2913570 |
| associated_media | None |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1305/AGRF_TSI_HF2M3DRX2_358776/ |
| birth_date | 2021-01-01 |
| bpa_dataset_id | 102.100.100/358776 |
| class | Magnoliopsida |
| collection_date | 2022-01-01 |
| collection_method | Leaves collected from seedlings of germinants from WASC-K exsitu seed collection |
| collector | Rachel Binks, Andrew Crawford, Leonie Monks |
| collector_sample_id | S08 |
| common_name | Matchstick banksia |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Rachel Binks, WA Department of Biodiversity, Conservation and Attractions |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358776 |
| dataset_url | researcher informed |
| date_of_transfer | 2022-07-19 |
| date_of_transfer_to_archive | 2022-07-20 |
| description | Banksia cuneata ddRAD (dataset ID 358776) |
| experimental_design | PstI & MspI |
| facility_project_code | CAGRF220410365 |
| family | Proteaceae |
| flowcell_id | HF2M3DRX2 |
| flowcell_type | SP 200 |
| folder_name | AGRF_TSI_HF2M3DRX2_358776 |
| genus | Banksia |
| health_state | Healthy |
| insert_size_range | 280-375 |
| institution_name | Dept of Biodiversity, Conservation and Attractions (DBCA) |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Single Read |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | seedling |
| material_conc_ng_ul | 73.4 |
| material_extracted_by | Nicola Delnevo |
| material_extraction_date | 2022-01-01 |
| material_extraction_method | Standard CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 8.0 |
| order | Proteales |
| phylum | Magnoliophyta |
| sample_custodian | Rachel Binks |
| sample_quality | Good |
| sample_type | Tissue sample |
| scientific_name | Banksia cuneata |
| scientific_name_authorship | A.S.George |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | ILLUMINA |
| source_population | Population 8 |
| species | cuneata |
| specimen_id_description | Initial letters denote tissue source (Adult v Seedling) and species if not cuneata; Subsequent numbers denote DBCA population identifiers + plant number; R indicates technical replicate |
| state_or_region | Western Australia |
| taxon_id | 83699.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1305 |
| tissue_collection_type | Living collection |
| tissue_preservation | silica |
| tissue_preservation_temperature | Room temperature |
| tissue_type | Leaf |
| wild_captive | nursery raised seedling from exsitu stored seed collection |
| work_order | 14027 |