Spotted tree frog, Population genetics, Illumina FASTQ, Toe pad
Dataset size is: 58.99 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-05-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1267/AGRF_TSI_H7HGGDRX2_358772_358773/ |
| bpa_dataset_id | 102.100.100/358772 |
| class | Amphibia |
| collection_date | 2021-12-31 |
| collector | Deon Gilbert |
| common_name | Spotted tree frog |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Elspeth McLennan |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358772 |
| date_of_transfer | 2022-05-24 |
| date_of_transfer_to_archive | 2022-05-26 |
| description | Armored mist frog and spotted tree frog ddRAD (dataset ID 358772) |
| experimental_design | PstI and MseI |
| family | Pelodryadidae |
| flowcell_id | H7HGGDRX2 |
| flowcell_type | SP 300 |
| folder_name | AGRF_TSI_H7HGGDRX2_358772_358773 |
| genus | Litoria |
| health_state | Healthy |
| insert_size_range | 280-342 |
| institution_name | Melbourne Zoo, Zoos Victoria |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2022-05-10 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | adult |
| location_text | Melbourne Zoo |
| material_conc_ng_ul | 39.1 |
| material_extracted_by | Lauren Alexander |
| material_extraction_date | 2022-02-01 |
| material_extraction_method | High Salt |
| material_extraction_type | Toe pad |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 2.0 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Deon Gilbert | Zoos Victoria |
| sample_quality | good |
| sample_type | tissue sample |
| scientific_name | Litoria spenceri |
| scientific_name_authorship | Dubois, 1984 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | spenceri |
| specimen_id_description | Zims |
| state_or_region | Victoriatoria |
| taxon_id | 135794.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1267 |
| tissue_preservation | Ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | Toe pad |
| wild_captive | captive |
| work_order | TSI-Bushfire |