Western quoll, Population genetics, Illumina FASTQ, ear margin
Dataset size is: 266.01 GiB
Data and Resources
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358763_HW3V3DRXY_TGACCA_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CGATGT_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CGATGT_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CTTGTA_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CGATGT_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GCCAAT_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_TGACCA_L002_R2.fastq.gz Metadata Only FASTQ
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TSI_NGS_HW3V3DRXY_library_metada... Metadata Only XLSX
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358763_HW3V3DRXY_CTTGTA_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GTGAAA_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CAGATC_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CGATGT_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_ACAGTG_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_ACAGTG_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CAGATC_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GTGAAA_L002_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_GCCAAT_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CAGATC_L001_R2.fastq.gz Metadata Only FASTQ
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358763_HW3V3DRXY_CAGATC_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-04-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | Location information restricted |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1229/AGRF_TSI_HW3V3DRXY_358763/ |
| bpa_dataset_id | 102.100.100/358763 |
| class | Mammalia |
| collection_date | 2015-05-06 |
| collection_method | cage trap |
| collector | Katherine Moseby | Ecological Horizons |
| collector_sample_id | Georgette, 915550 |
| common_name | Western quoll |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Kym Ottewell | DBCA |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358763 |
| date_of_transfer | 2022-04-27 |
| date_of_transfer_to_archive | 2022-04-27 |
| description | Dasyurus geoffroii (Chuditch) ddRAD (dataset ID 358763 and 358774) |
| facility_project_code | QAGRF21119037 |
| family | Dasyuridae |
| flowcell_id | HW3V3DRXY |
| flowcell_type | S1 300 |
| folder_name | AGRF_TSI_HW3V3DRXY_358763 |
| genus | Dasyurus |
| insert_size_range | 280-342 |
| institution_name | South Australian Museum |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2022-03-25 |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| location_text | Ikara-Flinders Ranges National Park |
| material_conc_ng_ul | 10.0 |
| material_extracted_by | Shelley McArthur | DBCA |
| material_extraction_date | 2021-10-29 |
| material_extraction_method | TNES Salt extraction |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 7.0 |
| order | Dasyuromorphia |
| phenotypic_sex | female |
| phylum | Chordata |
| sample_custodian | Katherine Moseby | Ecological Horizons |
| sample_quality | good |
| sample_type | ear biopsy |
| scientific_name | Dasyurus geoffroii |
| scientific_name_authorship | Gould, 1841 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | Manjimup, Western Australia |
| species | geoffroii |
| specimen_id_description | DBCA_internal_identifier |
| state_or_region | South Australia |
| taxon_id | 63143.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1229 |
| tissue_collection_type | wild organism |
| tissue_preservation | ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | ear margin |
| wild_captive | captive |
| work_order | 14021 |