Baw Baw frog, Population genetics, Illumina FASTQ, Skin clip
Dataset size is: 53.99 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-03-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1209/AGRF_TSI_HVW2TDRXY_358760/ |
| bpa_dataset_id | 102.100.100/358760 |
| class | Amphibia |
| collection_date | 2021-08-09 |
| collector | Deon Gilbert |
| common_name | Baw Baw frog |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Elspeth McLennan |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358760 |
| date_of_transfer | 2022-03-10 |
| date_of_transfer_to_archive | 2022-03-10 |
| description | Stuttering barred frog and Bawbaw frog (dataset ID 358760) |
| experimental_design | EcoRI and MseI |
| family | Limnodynastidae |
| flowcell_id | HVW2TDRXY |
| flowcell_type | SP 300 |
| folder_name | AGRF_TSI_HVW2TDRXY_358760 |
| genus | Philoria |
| insert_size_range | 280-342 |
| institution_name | Melbourne Zoo, Zoos Victoria |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Paired End |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2022-02-21 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_status | Sequenced |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | adult |
| location_text | Melbourne Zoo |
| material_conc_ng_ul | 107.8 |
| material_extracted_by | Kim Heasman |
| material_extraction_date | 2021-10-22 |
| material_extraction_method | High Salt |
| material_extraction_type | Skin clip |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 2.0 |
| order | Anura |
| phenotypic_sex | female |
| phylum | Chordata |
| sample_custodian | Deon Gilbert | Zoos Victoria |
| sample_quality | good |
| scientific_name | Philoria frosti |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | ILLUMINA |
| species | frosti |
| specimen_id_description | ZoosVictoriaID |
| state_or_region | Victoriatoria |
| taxon_id | 480037.0 |
| taxonomic_group | Amphibian |
| ticket | BPAOPS-1209 |
| tissue_preservation | Ethanol |
| tissue_type | Skin clip |
| wild_captive | captive |