Climbing galaxias, Population genetics, Illumina FASTQ, Fin
Dataset size is: 54.37 GiB
Data and Resources
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358756_HTVVMDRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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TSI_NGS_HTVVMDRXY_library_metada... Metadata Only XLSX
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358756_HTVVMDRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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358756_HTVVMDRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2023-02-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1185/AGRF_TSI_HTVVMDRXY_358756/ |
| bpa_dataset_id | 102.100.100/358756 |
| class | Actinopterygii |
| collection_method | unknown |
| collector | Chris Burridge |
| collector_sample_id | RL |
| common_name | Climbing galaxias |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Chris Burridge |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358756 |
| date_of_transfer | 2022-02-02 |
| date_of_transfer_to_archive | 2022-02-02 |
| decimal_latitude_public | -43.48 |
| decimal_longitude_public | 146.73 |
| description | Novaseq 6000 ddRAD Galaxias johnstoni ddRAD data set ID 358756 |
| experimental_design | PstI and MseI |
| facility_project_code | QAGRF21098340 |
| family | Galaxiidae |
| flowcell_id | HTVVMDRXY |
| flowcell_type | SP 200 |
| folder_name | AGRF_TSI_HTVVMDRXY_358756 |
| genotypic_sex | not determined |
| genus | Galaxias |
| insert_size_range | 280-342 |
| institution_name | University of Tasmania |
| latitude | -43.48 |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | single |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2022-01-20 |
| library_prepared_by | Simon Farrelly |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_strategy | RAD-Seq |
| library_type | ddRAD_AGRF |
| lifestage | unknown |
| location_text | Reservoir Lakes |
| longitude | 146.73 |
| material_extracted_by | Charlotte Jense |
| material_extraction_date | 2021-10-12 |
| material_extraction_method | Dneasy Blood & Tissue kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 4.0 |
| order | Galaxiiformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| sample_custodian | Chris Burridge, Bruce Deagle, Charlotte Jense |
| sample_type | Tissue sample |
| scientific_name | Galaxias brevipinnis |
| scientific_name_authorship | Gunther, 1866 |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| species | brevipinnis |
| specimen_id_description | Created by researcher as followes, including abbreviation for the species name including any sample ID given by the collector |
| state_or_region | Tasmania |
| taxon_id | 66447.0 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1185 |
| tissue_collection_type | University |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Fin |
| type_status | unknown |
| wild_captive | wild |
| work_order | 14019 |