Western barred bandicoot, Population genetics, Illumina FASTQ, Ear biopsy
Dataset size is: 52.50 GiB
Data and Resources
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358724_HTW2NDRXX_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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358724_HTW2NDRXX_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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358724_HTW2NDRXX_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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358724_HTW2NDRXX_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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358724_HTW2NDRXX_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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TSI_NGS_HTW2NDRXX_library_metada... Metadata Only XLSX
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358724_HTW2NDRXX_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2021-10-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | Location information restricted |
| ancillary_notes | D09259 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-966/AGRF_TSI_HTW2NDRXX_358724/ |
| bpa_dataset_id | 102.100.100/358724 |
| class | Mammalia |
| collection_date | 2019-05-04 |
| collector | Colleen Sims | DBCA |
| collector_sample_id | DS 52-19 |
| common_name | Western barred bandicoot |
| country | Australia |
| data_context | Population genetics |
| data_custodian | Kate Farquharson | USYD |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358724 |
| date_of_transfer | 2020-10-13 |
| date_of_transfer_to_archive | 2020-10-13 |
| description | NovaSeq 6000 ddRAD Perameles bougainville ddRAD data set ID 358724 |
| experimental_design | PstI and MspI |
| family | Peramelidae |
| flowcell_id | HTW2NDRXX |
| flowcell_type | SP 200 |
| folder_name | AGRF_TSI_HTW2NDRXX_358724 |
| genus | Perameles |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_layout | Single |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2020-09-18 |
| library_prepared_by | Holly McLean |
| library_selection | Reduced Representation |
| library_source | Genomic |
| library_status | Data available |
| library_strategy | RAD-Seq |
| library_type | ddRAD_AGRF |
| lifestage | adult |
| location_text | Dorre Island, White Beach |
| material_extracted_by | Shelley McArthur |DBCA |
| material_extraction_date | 2020-06-25 |
| material_extraction_method | High Salt |
| material_extraction_type | Ear biopsy |
| metadata_revision_date | 2023-11-30 |
| metadata_revision_filename | 20231130_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| n_libraries_pooled | 3.0 |
| order | Peramelemorphia |
| phenotypic_sex | male |
| phylum | Chordata |
| sample_custodian | Kym Ottewell | DBCA |
| sample_quality | good |
| sample_type | Tissue sample |
| scientific_name | Perameles bougainville |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | illumina |
| species | bougainville |
| specimen_id_description | DBCA identifier |
| state_or_region | Western Australia |
| taxon_id | 120735.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-966 |
| tissue_preservation | Ethanol |
| tissue_type | Ear biopsy |
| wild_captive | wild |
| work_order | 14001 |