Stemcell SingleCellRNASeq 25116-28799

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Field	Value
Resource Permissions	organization_member
Sequence Data Type	illumina-10x
analytical_platform	Single Cell RNAseq
archive_ingestion_date	2016-11-04
bpa_dataset_id	102.100.100/52053
contextual_data_submission_date	2016-01-09
data_generated	2016-11-04
data_type	FastQ
dataset_url	https://downloads-qcif.bioplatforms.com/bpa/stemcell/raw/single_cell_rnaseq/ramaciotti/BPAOPS-51/
date_of_transfer	2016-11-04
description	SOX10negative (25116 - 28799) (384 single cell transcriptomes)
disease_state	NA
facility	Ramaciotti
fastq_generation	Basespace
flow_id	HVC2VBGXY
folder_name	20161017_UNSW_BPA_Stemcells_HVC2VBGXY
growth_protocol	mMaple negative
insert_size_range	200-1000bp
library_construction_protocol	optimised version of CEL-Seq2 (Hashimshony et al., 2016)
library_strategy	Differentiated from hIPSC
omics	Transcriptomics
plate_number	2
research_group	Ernst Wolvetang
sample_description	SOX10 negative cells deposited in empty wells using FACS protocol
sample_id	102.100.100/25116
sample_id_range	25116-28799
sample_name	SOX10 neg empty
sample_submission_date	2016-01-09
sequencer	NextSeq500
species	Homo sapiens
stem_cell_line	PSC - Neural crest
stem_cell_state	Pluripotent stem cell state
submitter	Anu Balachandran
ticket	BPAOPS-51
total_samples	384