PPA, Proteomics, Data Dependent Acquisition (DDA), Dataset ID: 453270, Raw data
Dataset size is: 108.27 GiB
This dataset is currently under a short embargo period until September 27, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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448772_LibID449992_PPA_UniSA_LCM... Metadata Only RAW
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448767_LibID449987_PPA_UniSA_LCM... Metadata Only RAW
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448818_LibID450038_PPA_UniSA_LCM... Metadata Only RAW
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PPA_UNISA_453270_metadata.xlsx Metadata Only XLSX
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448880_LibID450100_PPA_UniSA_LCM... Metadata Only RAW
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448769_LibID449989_PPA_UniSA_LCM... Metadata Only RAW
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448770_LibID449990_PPA_UniSA_LCM... Metadata Only RAW
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448831_LibID450051_PPA_UniSA_LCM... Metadata Only RAW
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448865_LibID450085_PPA_UniSA_LCM... Metadata Only RAW
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448882_LibID450102_PPA_UniSA_LCM... Metadata Only RAW
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448862_LibID450082_PPA_UniSA_LCM... Metadata Only RAW
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448780_LibID450000_PPA_UniSA_LCM... Metadata Only RAW
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448775_LibID449995_PPA_UniSA_LCM... Metadata Only RAW
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448816_LibID450036_PPA_UniSA_LCM... Metadata Only RAW
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448814_LibID450034_PPA_UniSA_LCM... Metadata Only RAW
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448857_LibID450077_PPA_UniSA_LCM... Metadata Only RAW
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448879_LibID450099_PPA_UniSA_LCM... Metadata Only RAW
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448872_LibID450092_PPA_UniSA_LCM... Metadata Only RAW
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448783_LibID450003_PPA_UniSA_LCM... Metadata Only RAW
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448800_LibID450020_PPA_UniSA_LCM... Metadata Only RAW
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448836_LibID450056_PPA_UniSA_LCM... Metadata Only RAW
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448849_LibID450069_PPA_UniSA_LCM... Metadata Only RAW
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448777_LibID449997_PPA_UniSA_LCM... Metadata Only RAW
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448771_LibID449991_PPA_UniSA_LCM... Metadata Only RAW
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448821_LibID450041_PPA_UniSA_LCM... Metadata Only RAW
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448764_LibID449984_PPA_UniSA_LCM... Metadata Only RAW
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448844_LibID450064_PPA_UniSA_LCM... Metadata Only RAW
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448867_LibID450087_PPA_UniSA_LCM... Metadata Only RAW
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448825_LibID450045_PPA_UniSA_LCM... Metadata Only RAW
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448827_LibID450047_PPA_UniSA_LCM... Metadata Only RAW
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448786_LibID450006_PPA_UniSA_LCM... Metadata Only RAW
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448799_LibID450019_PPA_UniSA_LCM... Metadata Only RAW
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448824_LibID450044_PPA_UniSA_LCM... Metadata Only RAW
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448790_LibID450010_PPA_UniSA_LCM... Metadata Only RAW
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448861_LibID450081_PPA_UniSA_LCM... Metadata Only RAW
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448858_LibID450078_PPA_UniSA_LCM... Metadata Only RAW
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448822_LibID450042_PPA_UniSA_LCM... Metadata Only RAW
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448845_LibID450065_PPA_UniSA_LCM... Metadata Only RAW
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448864_LibID450084_PPA_UniSA_LCM... Metadata Only RAW
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448776_LibID449996_PPA_UniSA_LCM... Metadata Only RAW
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448881_LibID450101_PPA_UniSA_LCM... Metadata Only RAW
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448774_LibID449994_PPA_UniSA_LCM... Metadata Only RAW
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448798_LibID450018_PPA_UniSA_LCM... Metadata Only RAW
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448795_LibID450015_PPA_UniSA_LCM... Metadata Only RAW
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448807_LibID450027_PPA_UniSA_LCM... Metadata Only RAW
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448808_LibID450028_PPA_UniSA_LCM... Metadata Only RAW
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448778_LibID449998_PPA_UniSA_LCM... Metadata Only RAW
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448781_LibID450001_PPA_UniSA_LCM... Metadata Only RAW
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448876_LibID450096_PPA_UniSA_LCM... Metadata Only RAW
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448813_LibID450033_PPA_UniSA_LCM... Metadata Only RAW
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448851_LibID450071_PPA_UniSA_LCM... Metadata Only RAW
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448768_LibID449988_PPA_UniSA_LCM... Metadata Only RAW
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448802_LibID450022_PPA_UniSA_LCM... Metadata Only RAW
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448806_LibID450026_PPA_UniSA_LCM... Metadata Only RAW
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448820_LibID450040_PPA_UniSA_LCM... Metadata Only RAW
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448817_LibID450037_PPA_UniSA_LCM... Metadata Only RAW
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448852_LibID450072_PPA_UniSA_LCM... Metadata Only RAW
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448859_LibID450079_PPA_UniSA_LCM... Metadata Only RAW
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448860_LibID450080_PPA_UniSA_LCM... Metadata Only RAW
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448875_LibID450095_PPA_UniSA_LCM... Metadata Only RAW
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448791_LibID450011_PPA_UniSA_LCM... Metadata Only RAW
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448873_LibID450093_PPA_UniSA_LCM... Metadata Only RAW
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448883_LibID450103_PPA_UniSA_LCM... Metadata Only RAW
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448782_LibID450002_PPA_UniSA_LCM... Metadata Only RAW
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448810_LibID450030_PPA_UniSA_LCM... Metadata Only RAW
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448812_LibID450032_PPA_UniSA_LCM... Metadata Only RAW
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448841_LibID450061_PPA_UniSA_LCM... Metadata Only RAW
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448832_LibID450052_PPA_UniSA_LCM... Metadata Only RAW
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448826_LibID450046_PPA_UniSA_LCM... Metadata Only RAW
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448853_LibID450073_PPA_UniSA_LCM... Metadata Only RAW
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448874_LibID450094_PPA_UniSA_LCM... Metadata Only RAW
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448856_LibID450076_PPA_UniSA_LCM... Metadata Only RAW
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448803_LibID450023_PPA_UniSA_LCM... Metadata Only RAW
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448829_LibID450049_PPA_UniSA_LCM... Metadata Only RAW
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448773_LibID449993_PPA_UniSA_LCM... Metadata Only RAW
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448834_LibID450054_PPA_UniSA_LCM... Metadata Only RAW
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448877_LibID450097_PPA_UniSA_LCM... Metadata Only RAW
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448779_LibID449999_PPA_UniSA_LCM... Metadata Only RAW
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448839_LibID450059_PPA_UniSA_LCM... Metadata Only RAW
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448850_LibID450070_PPA_UniSA_LCM... Metadata Only RAW
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448815_LibID450035_PPA_UniSA_LCM... Metadata Only RAW
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448846_LibID450066_PPA_UniSA_LCM... Metadata Only RAW
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448854_LibID450074_PPA_UniSA_LCM... Metadata Only RAW
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448838_LibID450058_PPA_UniSA_LCM... Metadata Only RAW
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448855_LibID450075_PPA_UniSA_LCM... Metadata Only RAW
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448863_LibID450083_PPA_UniSA_LCM... Metadata Only RAW
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448848_LibID450068_PPA_UniSA_LCM... Metadata Only RAW
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448793_LibID450013_PPA_UniSA_LCM... Metadata Only RAW
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448840_LibID450060_PPA_UniSA_LCM... Metadata Only RAW
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448866_LibID450086_PPA_UniSA_LCM... Metadata Only RAW
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448804_LibID450024_PPA_UniSA_LCM... Metadata Only RAW
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448794_LibID450014_PPA_UniSA_LCM... Metadata Only RAW
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448870_LibID450090_PPA_UniSA_LCM... Metadata Only RAW
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448878_LibID450098_PPA_UniSA_LCM... Metadata Only RAW
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448784_LibID450004_PPA_UniSA_LCM... Metadata Only RAW
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448789_LibID450009_PPA_UniSA_LCM... Metadata Only RAW
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448837_LibID450057_PPA_UniSA_LCM... Metadata Only RAW
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448819_LibID450039_PPA_UniSA_LCM... Metadata Only RAW
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448843_LibID450063_PPA_UniSA_LCM... Metadata Only RAW
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448805_LibID450025_PPA_UniSA_LCM... Metadata Only RAW
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448766_LibID449986_PPA_UniSA_LCM... Metadata Only RAW
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448868_LibID450088_PPA_UniSA_LCM... Metadata Only RAW
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448828_LibID450048_PPA_UniSA_LCM... Metadata Only RAW
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448792_LibID450012_PPA_UniSA_LCM... Metadata Only RAW
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448787_LibID450007_PPA_UniSA_LCM... Metadata Only RAW
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448833_LibID450053_PPA_UniSA_LCM... Metadata Only RAW
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448871_LibID450091_PPA_UniSA_LCM... Metadata Only RAW
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448835_LibID450055_PPA_UniSA_LCM... Metadata Only RAW
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448797_LibID450017_PPA_UniSA_LCM... Metadata Only RAW
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448830_LibID450050_PPA_UniSA_LCM... Metadata Only RAW
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448847_LibID450067_PPA_UniSA_LCM... Metadata Only RAW
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448823_LibID450043_PPA_UniSA_LCM... Metadata Only RAW
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448788_LibID450008_PPA_UniSA_LCM... Metadata Only RAW
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448842_LibID450062_PPA_UniSA_LCM... Metadata Only RAW
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448869_LibID450089_PPA_UniSA_LCM... Metadata Only RAW
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448809_LibID450029_PPA_UniSA_LCM... Metadata Only RAW
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448811_LibID450031_PPA_UniSA_LCM... Metadata Only RAW
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448796_LibID450016_PPA_UniSA_LCM... Metadata Only RAW
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448765_LibID449985_PPA_UniSA_LCM... Metadata Only RAW
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448785_LibID450005_PPA_UniSA_LCM... Metadata Only RAW
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448801_LibID450021_PPA_UniSA_LCM... Metadata Only RAW
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members |
| Access Control Date | 2025-09-27 |
| Access Control Mode | date |
| Sequence Data Type | proteomics |
| acquisition_mode_fragmentation | FAIMS-DDA TopN (-50 CV cycle time = 0.75 s, -70 CV cycle time = 0.75 s) / HCD |
| analytical_platform | MS1 quantification |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/proteomics-raw/BPAOPS-1692/20240927_PPA_UNISA_453270/ |
| bioplatforms_dataset_id | 102.100.100/453270 |
| bioplatforms_project | Plant Protein Atlas (PPA) |
| class | Magnoliopsida |
| collector | Ruwan Lenorage, SARDI |
| common_name | Faba bean, fava bean |
| country | Australia |
| data_context | Data Dependent Acquisition (DDA) |
| data_type | Main dataset |
| date_of_transfer | 2024-09-27 |
| date_of_transfer_to_archive | 2024-09-27 |
| description | Proteomics DDA raw data |
| experiment_type | Field trial |
| facility | UniSA |
| facility_project_code | QN0138 |
| family | Fabaceae |
| file_description | .raw |
| genus | Vicia |
| gradient_time | 50 min / 3% - 22% / 300 nl/min |
| initiative_code | PPA |
| lc_column_type | EASY-nLC 1200 (Thermo Scientific) with 25 cm in-house packed fused silica column (75 µm inner diameter, 360 µm outer diameter) containing 1.9 µm ReproSil-Pur 120 C18-AQ particles (Dr Maisch) heated to 50 °C |
| mass_spectrometer | Orbitrap Exploris 480 (Thermo Scientific) |
| metadata_revision_date | 2023-10-27 |
| metadata_revision_filename | Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx |
| omics | Proteomics |
| order | Fabales |
| phylum | Streptophyta |
| planting_season | 2022 |
| proteomics_facility | Mass Spectrometry and Proteomics, University of South Australia |
| raw_or_analysed_data | Raw data |
| sample_collection_type | Field trial |
| sample_fractionation | None |
| sample_on_column | 0.5 |
| sample_type | Mature grain |
| scientific_name | Vicia faba |
| species | faba |
| specimen_custodian | SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples) |
| taxon_id | 3906 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1692 |
| tissue | Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre) |
| tissue_preservation | Snap frozen (transcriptome, metabolome) |
| tissue_preservation_temperature | -80°C (transcriptome, metabolome), 4°C (proteome, fibre) |
| variety_commercial | Y |
| wild_captive | Cultivated |