PPA, Metabolomics, Lipid profiling - positive mode, Dataset ID: 453273, Raw data

Faba bean, fava bean, SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)

Dataset size is: 995.20 MiB

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members
Access Control Date 2025-11-19
Access Control Mode date
Sequence Data Type metabolomics
acquisition_mode Positive (m/z 100-1500)
activation_type CID
analysis_type lipid profiling
analytical_platform Agilent 1290 infinity II HPLC (LC) Sciex Zeno TOF 7600 (MS)
base_url https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/metabolomics/BPAOPS-1719/20241119_PPA_MA_AWRI_453273/
bioplatforms_dataset_id 102.100.100/453273
bioplatforms_project Plant Protein Atlas (PPA)
class Magnoliopsida
collector Ruwan Lenorage, SARDI
common_name Faba bean, fava bean
country Australia
data_context Lipid profiling - positive mode
data_type Main dataset
date_of_transfer 2024-11-19
date_of_transfer_to_archive 2024-11-19
description Lipid profiling - positive mode
experiment_type Field trial
facility MA-AWRI
facility_project_code Q202210I
family Fabaceae
file_description file containing the LCMS profile of the sample acquired in MS1 and MS2
genus Vicia
gradient_time Flow rate= 0.4 ml/min. Flow Gradient=10% Solvent B at 0 min, then increasing to 45% at 2.70 min, 53% at 2.80 min, 65% at 9 min, 89% at 9.10 min, 92% at 11 min, 100% at 11.10 min and kept to 11.90 min. Following this an equlibration step was implemented; 10% Solvent B from 12 minutes until the analysis end (15 min).
initiative_code PPA
lc_column_type Agilent Zorbax EclipsePlus C18 RRHD 1.8um 100*2.1 mm
mass_spectrometer Sciex ZenoTOF 7600
metabolomics_facility MA_AWRI
metadata_revision_date 2023-10-27
metadata_revision_filename Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx
mobile_phase_composition Solvent A (10mM ammonium acetate in 20%Isopropanol,30% Acetonitrile in, 50% MilliQ water), Solvent B (10mM ammonium acetate in 90% Isopropanol, 9%Acetonitrile, 1% MilliQ water)
nmr_nucleus N/A
nmr_probe_type N/A
nmr_pulse_sequence N/A
omics Metabolomics
order Fabales
phylum Streptophyta
planting_season 2022
raw_or_analysed_data Raw data
sample_collection_type Field trial
sample_fractionation_extraction_solvent Isopropanol (0.01 % butyl hydroxy toluene), Methanol,Chloroform, MilliQ water (ratio 2:3.32:2.4:0.28)
sample_type Mature grain
scientific_name Vicia faba
species faba
specimen_custodian SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)
taxon_id 3906
taxonomic_group Plant
ticket BPAOPS-1719
tissue Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre)
tissue_preservation Snap frozen (transcriptome, metabolome)
tissue_preservation_temperature -80°C (transcriptome, metabolome), 4°C (proteome, fibre)
variety_commercial Y
wild_captive Cultivated