PPA, Metabolomics, Anti-nutritive, Dataset ID: 453269, Raw data

Faba bean, fava bean, SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)

Dataset size is: 69.21 MiB

Log in or Register to access resource
 
 

 

Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members
Access Control Date 2025-12-16
Access Control Mode date
Sequence Data Type metabolomics
acquisition_mode Positive
activation_type CID
analytical_platform Agilent 1290 Infinity (LC) Sciex Triple Quad 4500 (MS)
base_url https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/metabolomics/BPAOPS-1733/20241216_PPA_MA_AWRI_453269/
bioplatforms_dataset_id 102.100.100/453269
bioplatforms_project Plant Protein Atlas (PPA)
class Magnoliopsida
collector Ruwan Lenorage, SARDI
common_name Faba bean, fava bean
country Australia
data_context Anti-nutritive
data_type Main dataset
date_of_transfer 2024-12-16
date_of_transfer_to_archive 2024-12-18
description LC-MS antinutritive quantitation
experiment_type Field trial
facility MA-AWRI
facility_project_code Q202210I
family Fabaceae
file_description File containing the LC-MS MRM trace for Vicine and Convicine
genus Vicia
gradient_time Flow rate= 0.4 ml/min. Flow Gradient= 90% Solvent B at 0 min, then decreasing to 80% B at 10.00 min, 70% B at 11.00 min and to 60% B at 25.00 min. Following this an equilibration step was implemented by setting Solvent B at 90% from 25.20 min to 30.00 min.
initiative_code PPA
lc_column_type Waters XBridge Amide 3.5 μm 150*2.1 mm
mass_spectrometer Sciex Triple Quad 4500
metabolomics_facility MA_AWRI
metadata_revision_date 2023-10-27
metadata_revision_filename Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx
mobile_phase_composition Solvent A (0.1% Formic Acid, 10mM Ammonium Formate in MilliQ water) Solvent B (100% Acetonitrile)
nmr_nucleus N/A
nmr_probe_type N/A
nmr_pulse_sequence N/A
omics Metabolomics
order Fabales
phylum Streptophyta
planting_season 2022
raw_or_analysed_data Raw data
sample_collection_type Field trial
sample_fractionation_extraction_solvent Acetonitrile, MilliQWater (ratio 70:30)
sample_type Mature grain
scientific_name Vicia faba
species faba
specimen_custodian SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)
taxon_id 3906
taxonomic_group Plant
ticket BPAOPS-1733
tissue Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre)
tissue_preservation Snap frozen (transcriptome, metabolome)
tissue_preservation_temperature -80°C (transcriptome, metabolome), 4°C (proteome, fibre)
variety_commercial Y
wild_captive Cultivated