PPA, Metabolomics, Non-polar metabolite profiling - negative mode, Dataset ID: 453268, Raw data

Faba bean, fava bean, SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)

Dataset size is: 59.70 GiB

Log in or Register to access resource
 
 

 

Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members
Access Control Date 2025-09-11
Access Control Mode date
Sequence Data Type metabolomics
acquisition_mode Negative (m/z 50-1000)
activation_type HCD
analysis_type non-polar metabolite profiling
analytical_platform Thermo Scientific Vanquish Horizon (LC) Thermo Orbitrap Tribrid IDX (MS)
base_url https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/metabolomics/BPAOPS-1678/20240911_PPA_MA_AWRI_453268/
bioplatforms_dataset_id 102.100.100/453268
bioplatforms_project Plant Protein Atlas (PPA)
class Magnoliopsida
collector Ruwan Lenorage, SARDI
common_name Faba bean, fava bean
country Australia
data_context Non-polar metabolite profiling - negative mode
data_type Main dataset
date_of_transfer 2024-09-11
date_of_transfer_to_archive 2024-09-11
description Non-polar metabolite profiling - negative mode
experiment_type Field trial
facility MA-AWRI
facility_project_code Q202210I
family Fabaceae
file_description file containing the LCMS profile of the sample acquired in MS1
genus Vicia
gradient_time Flow rate= 0.4 ml/min. Flow Gradient= 0% Solvent B at 0 min, then increasing to 1% at 6.25min, 7.5% at 20 min, 60% at 30 min, 90% at 33 min, and kept at 90% for 5 minutes until, min 38. Following this washing and equlibration steps were implemented; 0% Solvent B at 38.2 min, 90% at 38.4 min, 0% at 38.6 min and 90% at 38.8. At 39.0 min the % of Solvent B was 0 and was kept for 3 min until min 42 to re-quilibrate the column for the following analysis.
initiative_code PPA
lc_column_type Phenomenex Kinetex F5 2.6 μm 150*2.1 mm
mass_spectrometer Orbitrap Tribrid IDX
metabolomics_facility MA_AWRI
metadata_revision_date 2023-10-27
metadata_revision_filename Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx
mobile_phase_composition Solvent A (01.% Formic Acid, 0.5% Metahnol in MilliQ water) , 75 uL Solvent B (0.1% Formic Acid, 2% MilliQ water, 40% Acetonitrile in Methanol)
nmr_nucleus N/A
nmr_probe_type N/A
nmr_pulse_sequence N/A
omics Metabolomics
order Fabales
phylum Streptophyta
planting_season 2022
raw_or_analysed_data Raw data
sample_collection_type Field trial
sample_fractionation_extraction_solvent MeOH, CHCl3, MilliQ Water (rato 3:3:2)
sample_type Mature grain
scientific_name Vicia faba
species faba
specimen_custodian SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)
taxon_id 3906
taxonomic_group Plant
ticket BPAOPS-1678
tissue Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre)
tissue_preservation Snap frozen (transcriptome, metabolome)
tissue_preservation_temperature -80°C (transcriptome, metabolome), 4°C (proteome, fibre)
variety_commercial Y
wild_captive Cultivated