Dataset

PPA, Metabolomics, Polar metabolite profiling - positive mode, Dataset ID: 453265, Raw data

Faba bean, fava bean, SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)

Dataset size is: 33.46 GiB

This dataset is currently under a short embargo period until October 10, 2025 to enable primary access by research partners.

If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.

Data and Resources

453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448795_LibID449415_PPA_MA_AWRI_L... Metadata Only RAW

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448853_LibID449473_PPA_MA_AWRI_L... Metadata Only RAW

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448779_LibID449399_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448790_LibID449410_PPA_MA_AWRI_L... Metadata Only RAW

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448804_LibID449424_PPA_MA_AWRI_L... Metadata Only RAW

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448786_LibID449406_PPA_MA_AWRI_L... Metadata Only RAW

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448848_LibID449468_PPA_MA_AWRI_L... Metadata Only RAW

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448849_LibID449469_PPA_MA_AWRI_L... Metadata Only RAW

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448883_LibID449503_PPA_MA_AWRI_L... Metadata Only RAW

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448852_LibID449472_PPA_MA_AWRI_L... Metadata Only RAW

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448850_LibID449470_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448816_LibID449436_PPA_MA_AWRI_L... Metadata Only RAW

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448815_LibID449435_PPA_MA_AWRI_L... Metadata Only RAW

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448772_LibID449392_PPA_MA_AWRI_L... Metadata Only RAW

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448867_LibID449487_PPA_MA_AWRI_L... Metadata Only RAW

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448767_LibID449387_PPA_MA_AWRI_L... Metadata Only RAW

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448826_LibID449446_PPA_MA_AWRI_L... Metadata Only RAW

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448801_LibID449421_PPA_MA_AWRI_L... Metadata Only RAW

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448782_LibID449402_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448858_LibID449478_PPA_MA_AWRI_L... Metadata Only RAW

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448833_LibID449453_PPA_MA_AWRI_L... Metadata Only RAW

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448847_LibID449467_PPA_MA_AWRI_L... Metadata Only RAW

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448872_LibID449492_PPA_MA_AWRI_L... Metadata Only RAW

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448875_LibID449495_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448811_LibID449431_PPA_MA_AWRI_L... Metadata Only RAW

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448820_LibID449440_PPA_MA_AWRI_L... Metadata Only RAW

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448792_LibID449412_PPA_MA_AWRI_L... Metadata Only RAW

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448836_LibID449456_PPA_MA_AWRI_L... Metadata Only RAW

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448822_LibID449442_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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PPA_MA_AWRI_453265_metadata.xlsx Metadata Only XLSX

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448768_LibID449388_PPA_MA_AWRI_L... Metadata Only RAW

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448812_LibID449432_PPA_MA_AWRI_L... Metadata Only RAW

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448788_LibID449408_PPA_MA_AWRI_L... Metadata Only RAW

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448880_LibID449500_PPA_MA_AWRI_L... Metadata Only RAW

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448770_LibID449390_PPA_MA_AWRI_L... Metadata Only RAW

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448810_LibID449430_PPA_MA_AWRI_L... Metadata Only RAW

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448860_LibID449480_PPA_MA_AWRI_L... Metadata Only RAW

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448797_LibID449417_PPA_MA_AWRI_L... Metadata Only RAW

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448785_LibID449405_PPA_MA_AWRI_L... Metadata Only RAW

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448835_LibID449455_PPA_MA_AWRI_L... Metadata Only RAW

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448866_LibID449486_PPA_MA_AWRI_L... Metadata Only RAW

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448877_LibID449497_PPA_MA_AWRI_L... Metadata Only RAW

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448868_LibID449488_PPA_MA_AWRI_L... Metadata Only RAW

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448834_LibID449454_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448831_LibID449451_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448869_LibID449489_PPA_MA_AWRI_L... Metadata Only RAW

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448777_LibID449397_PPA_MA_AWRI_L... Metadata Only RAW

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448824_LibID449444_PPA_MA_AWRI_L... Metadata Only RAW

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448783_LibID449403_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448837_LibID449457_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448845_LibID449465_PPA_MA_AWRI_L... Metadata Only RAW

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448862_LibID449482_PPA_MA_AWRI_L... Metadata Only RAW

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448825_LibID449445_PPA_MA_AWRI_L... Metadata Only RAW

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448842_LibID449462_PPA_MA_AWRI_L... Metadata Only RAW

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448876_LibID449496_PPA_MA_AWRI_L... Metadata Only RAW

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448774_LibID449394_PPA_MA_AWRI_L... Metadata Only RAW

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448873_LibID449493_PPA_MA_AWRI_L... Metadata Only RAW

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448775_LibID449395_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448846_LibID449466_PPA_MA_AWRI_L... Metadata Only RAW

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448828_LibID449448_PPA_MA_AWRI_L... Metadata Only RAW

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448773_LibID449393_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448791_LibID449411_PPA_MA_AWRI_L... Metadata Only RAW

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448874_LibID449494_PPA_MA_AWRI_L... Metadata Only RAW

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448764_LibID449384_PPA_MA_AWRI_L... Metadata Only RAW

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448863_LibID449483_PPA_MA_AWRI_L... Metadata Only RAW

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448843_LibID449463_PPA_MA_AWRI_L... Metadata Only RAW

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448821_LibID449441_PPA_MA_AWRI_L... Metadata Only RAW

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448854_LibID449474_PPA_MA_AWRI_L... Metadata Only RAW

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448794_LibID449414_PPA_MA_AWRI_L... Metadata Only RAW

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448800_LibID449420_PPA_MA_AWRI_L... Metadata Only RAW

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448818_LibID449438_PPA_MA_AWRI_L... Metadata Only RAW

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448832_LibID449452_PPA_MA_AWRI_L... Metadata Only RAW

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448766_LibID449386_PPA_MA_AWRI_L... Metadata Only RAW

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448781_LibID449401_PPA_MA_AWRI_L... Metadata Only RAW

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448859_LibID449479_PPA_MA_AWRI_L... Metadata Only RAW

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448808_LibID449428_PPA_MA_AWRI_L... Metadata Only RAW

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448841_LibID449461_PPA_MA_AWRI_L... Metadata Only RAW

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448864_LibID449484_PPA_MA_AWRI_L... Metadata Only RAW

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448793_LibID449413_PPA_MA_AWRI_L... Metadata Only RAW

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448776_LibID449396_PPA_MA_AWRI_L... Metadata Only RAW

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448871_LibID449491_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448819_LibID449439_PPA_MA_AWRI_L... Metadata Only RAW

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448827_LibID449447_PPA_MA_AWRI_L... Metadata Only RAW

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448784_LibID449404_PPA_MA_AWRI_L... Metadata Only RAW

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448817_LibID449437_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448840_LibID449460_PPA_MA_AWRI_L... Metadata Only RAW

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448765_LibID449385_PPA_MA_AWRI_L... Metadata Only RAW

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448857_LibID449477_PPA_MA_AWRI_L... Metadata Only RAW

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448830_LibID449450_PPA_MA_AWRI_L... Metadata Only RAW

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448838_LibID449458_PPA_MA_AWRI_L... Metadata Only RAW

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448851_LibID449471_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448789_LibID449409_PPA_MA_AWRI_L... Metadata Only RAW

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448839_LibID449459_PPA_MA_AWRI_L... Metadata Only RAW

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448856_LibID449476_PPA_MA_AWRI_L... Metadata Only RAW

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448878_LibID449498_PPA_MA_AWRI_L... Metadata Only RAW

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448882_LibID449502_PPA_MA_AWRI_L... Metadata Only RAW

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448870_LibID449490_PPA_MA_AWRI_L... Metadata Only RAW

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448805_LibID449425_PPA_MA_AWRI_L... Metadata Only RAW

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448814_LibID449434_PPA_MA_AWRI_L... Metadata Only RAW

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448780_LibID449400_PPA_MA_AWRI_L... Metadata Only RAW

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448798_LibID449418_PPA_MA_AWRI_L... Metadata Only RAW

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448861_LibID449481_PPA_MA_AWRI_L... Metadata Only RAW

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448799_LibID449419_PPA_MA_AWRI_L... Metadata Only RAW

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448802_LibID449422_PPA_MA_AWRI_L... Metadata Only RAW

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448769_LibID449389_PPA_MA_AWRI_L... Metadata Only RAW

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448806_LibID449426_PPA_MA_AWRI_L... Metadata Only RAW

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448771_LibID449391_PPA_MA_AWRI_L... Metadata Only RAW

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448823_LibID449443_PPA_MA_AWRI_L... Metadata Only RAW

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448787_LibID449407_PPA_MA_AWRI_L... Metadata Only RAW

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448865_LibID449485_PPA_MA_AWRI_L... Metadata Only RAW

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448803_LibID449423_PPA_MA_AWRI_L... Metadata Only RAW

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448879_LibID449499_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448844_LibID449464_PPA_MA_AWRI_L... Metadata Only RAW

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448855_LibID449475_PPA_MA_AWRI_L... Metadata Only RAW

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448829_LibID449449_PPA_MA_AWRI_L... Metadata Only RAW

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448809_LibID449429_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448813_LibID449433_PPA_MA_AWRI_L... Metadata Only RAW

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448796_LibID449416_PPA_MA_AWRI_L... Metadata Only RAW

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453265_PPA_MA_AWRI_LCMS_polar_me... Metadata Only RAW

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448807_LibID449427_PPA_MA_AWRI_L... Metadata Only RAW

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448881_LibID449501_PPA_MA_AWRI_L... Metadata Only RAW

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448778_LibID449398_PPA_MA_AWRI_L... Metadata Only RAW

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Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field	Value
Resource Permissions	organization_member_after_embargo:date_of_transfer_to_archive:365:ppa-consortium-members
Access Control Date	2025-10-10
Access Control Mode	date
Sequence Data Type	metabolomics
acquisition_mode	Positive (m/z 50-1000)
activation_type	HCD
analysis_type	Polar metabolite profiling
analytical_platform	Thermo Scientific Vanquish Horizon (LC) Thermo Orbitrap Tribrid IDX (MS)
base_url	https://downloads-qcif.bioplatforms.com/bpa/ppa_staging/metabolomics/BPAOPS-1700/20241010_PPA_MA_AWRI_453265/
bioplatforms_dataset_id	102.100.100/453265
bioplatforms_project	Plant Protein Atlas (PPA)
class	Magnoliopsida
collector	Ruwan Lenorage, SARDI
common_name	Faba bean, fava bean
country	Australia
data_context	Polar metabolite profiling - positive mode
data_type	Main dataset
date_of_transfer	2024-10-10
date_of_transfer_to_archive	2024-10-10
description	Polar metabolite profiling - positive mode
experiment_type	Field trial
facility	MA-AWRI
facility_project_code	Q202210I
family	Fabaceae
file_description	file containing the LCMS profile of the sample acquired in MS1
genus	Vicia
gradient_time	Flow rate= 0.4 ml/min. Flow Gradient= 75% Solvent B at 0 min held for 0.5 min, then decreasing to 50% B at 36 min and held for 2 min. Following this an equlibration step was implemented by setting Solvent B at 75% from 38.00 min to 38.50 min.
initiative_code	PPA
lc_column_type	Waters Xbridge 3.5 µm 150mm x 2.1mm ID
mass_spectrometer	Orbitrap Tribrid IDX
metabolomics_facility	MA_AWRI
metadata_revision_date	2023-10-27
metadata_revision_filename	Sample_ID_Faba_bean_2023-06-15_120_samples_forQCIF.xlsx
mobile_phase_composition	Solvent A (20mM ammonium acetate in Milli-Q water, adjusted to pH 4.4 with Acetic Acid) , 75 uL Solvent B (Acetonitrile )
nmr_nucleus	N/A
nmr_probe_type	N/A
nmr_pulse_sequence	N/A
omics	Metabolomics
order	Fabales
phylum	Streptophyta
planting_season	2022
raw_or_analysed_data	Raw data
sample_collection_type	Field trial
sample_fractionation_extraction_solvent	MeOH, CHCl3, MilliQ Water (rato 3:3:2)
sample_type	Mature grain
scientific_name	Vicia faba
species	faba
specimen_custodian	SARDI_Dr Lachlan Lake (field trial), SARDI_Dr Julie Hayes (prepared samples)
taxon_id	3906
taxonomic_group	Plant
ticket	BPAOPS-1700
tissue	Mechanically de-hulled grain pieces (transcriptome), mechanically de-hulled and finely milled grain (proteome, metabolome, fibre)
tissue_preservation	Snap frozen (transcriptome, metabolome)
tissue_preservation_temperature	-80°C (transcriptome, metabolome), 4°C (proteome, fibre)
variety_commercial	Y
wild_captive	Cultivated