Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395844
Dataset size is: 19.62 GiB
This dataset is currently under a short embargo period until September 20, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj042 |
| Access Control Date | 2025-09-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1690/20240919_PP_AGRF_CAGRF24050038_m84073_240914_195849_s4/ |
| bioplatforms_dataset_id | 102.100.100/399056 |
| bioplatforms_library_id | 102.100.100/398106 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP042_T_minima |
| bioplatforms_sample_id | 102.100.100/395844 |
| ccg_jira_ticket | BPAOPS-1690 |
| cell_postion | A01 |
| class | Pucciniomycetes |
| collection_date | 2024-06-03 |
| collection_method | Urediniospores removed from surface of multiple leaves using Mini Cyclone Spore Collector |
| collector | Pearce, T |
| collector_sample_id | BBRB12 |
| common_name | Blueberry Rust |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio-HiFi |
| date_data_published | 27/09/2024 |
| date_of_transfer | 2024-09-20 |
| date_of_transfer_to_archive | 2024-09-26 |
| decimal_latitude_public | -41.110349 |
| decimal_longitude_public | 146.009549 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1690 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF24050038 |
| facility_sample_id | 395844 |
| family | Pucciniastraceae |
| fast5_compression | NA |
| flowcell_id | m84073_240914_195849_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240919_PP_AGRF_CAGRF24050038_m84073_240914_195849_s4 |
| genus | Pucciniastrum |
| host_common_name | Blueberry |
| host_family | Ericaceae |
| host_organ | leaves |
| host_scientific_name | Vaccinium corymbosum |
| host_status | Cultivated perrrenial |
| host_symptom | Black spots/rust pustules |
| insert_size_range | 12800.0 |
| isolate | BBR12 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 398106 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-08-14 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_info_restricted | No |
| location_text | Commerical Blueberry Orchard Block 12 |
| material_conc_ng_ul | 100.0 |
| material_extracted_by | Tamieka Pearce | University of Tasmania |
| material_extraction_date | 2024-06-14 |
| material_extraction_method | Rust spores sucked from leaves, ground in liquid N with sand, extracted with Qiagen genome kit |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-12-05 |
| metadata_revision_filename | 2024-11-06_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 33.0 |
| order | Pucciniales |
| phylum | Basidiomycota |
| project_lead | Tamieka Pearce | University of Tasmania |
| sample_collection_type | Herbarium |
| sample_custodian | Tamieka Pearce | University of Tasmania |
| sample_id | 395844 |
| sample_type | Rust pustules on blueberry leaves (mixed culture) |
| scientific_name | Pucciniastrum minimum |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | minimum |
| specimen_custodian | NSW Department of Primary Industries and Regional Development (DAR) |
| specimen_id | DAR 76590 |
| specimen_id_description | NSW Department of Primary Industries and Regional Development (DAR) |
| state_or_region | Sulphur Creek, Tasmania |
| taxon_id | 761846 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1690 |
| tissue | Leaf abaxial epidermis |
| tissue_preservation | Pressed and dried |
| tissue_preservation_temperature | Room temperature |
| wild_captive | Wild |
| work_order | 20048 |