Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395841
Dataset size is: 1.03 GiB
This dataset is currently under a short embargo period until August 26, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj026 |
| Access Control Date | 2025-08-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1663/20240822_PP_AGRF_CAGRF24020140_m84073_240816_063353_s4/ |
| bioplatforms_dataset_id | 102.100.100/399043 |
| bioplatforms_library_id | 102.100.100/398102 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP026_Foc |
| bioplatforms_sample_id | 102.100.100/395841 |
| ccg_jira_ticket | BPAOPS-1663 |
| cell_postion | A01 |
| class | Sordariomycetes |
| collection_date | 2015-03-23 |
| collector | Davis, R.I., Grice, K.R., Trevorrow, P.R., McDougall, G., Pearce, C., Maneckshana, C. |
| collector_sample_id | TR4-22 |
| country | Australia |
| data_context | Genomics |
| data_type | Long read |
| date_data_published | 27/08/2024 |
| date_of_transfer | 2024-08-26 |
| date_of_transfer_to_archive | 2024-08-27 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1663 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF24020140 |
| facility_sample_id | 395841 |
| family | Nectriaceae |
| fast5_compression | NA |
| flowcell_id | m84073_240816_063353_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240822_PP_AGRF_CAGRF24020140_m84073_240816_063353_s4 |
| genus | Fusarium |
| host_common_name | Banana |
| host_family | Musaceae |
| host_organ | Pseudostem and corm |
| host_scientific_name | Musa acuminata |
| host_status | Crop species |
| host_symptom | Yellowing, wilting, death |
| insert_size_range | 10600.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 398102 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-07-14 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 250.0 |
| material_extracted_by | Keith Lim | Qld Department of Agriculture and Fisheries |
| material_extraction_date | 2024-06-26 |
| material_extraction_method | Qiagen Genomic Tips |
| material_extraction_type | HMW gDNA |
| metadata_revision_date | 2024-12-05 |
| metadata_revision_filename | 2024-11-06_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 33.0 |
| order | Hypocereales |
| phylum | Ascomycota |
| project_lead | Tuan Nguyen | Queensland Department of Agriculture and Fisheries (QDAF) |
| sample_collection_type | Herbarium |
| sample_custodian | Yu Pei Tan | Queensland Department of Agriculture and Fisheries |
| sample_id | 395841 |
| sample_type | Cultured, whole organism |
| scientific_name | Fusarium oxysporum forma specialis cubense |
| scientific_name_authorship | (E.F. Sm.) W.C. Snyder & H.N. Hansen, 1940 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | oxysporum |
| specimen_custodian | Qld DAF Plant Pathology Herbarium |
| specimen_id | BRIP 62347a |
| specimen_id_description | Queensland Plant Pathogen Herbarium |
| state_or_region | Queensland |
| taxon_id | 660034 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1663 |
| tissue | vascular |
| work_order | 20044 |