Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395386
Dataset size is: 6.60 GiB
This dataset is currently under a short embargo period until August 10, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj039 |
| Access Control Date | 2024-08-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1452/20230809_PP_AGRF_CAGRF230615297_m84073_230802_055109_s2/ |
| bioplatforms_dataset_id | 102.100.100/399036 |
| bioplatforms_library_id | 102.100.100/397640 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP039_R_commune |
| bioplatforms_sample_id | 102.100.100/395386 |
| ccg_jira_ticket | BPAOPS-1452 |
| cell_postion | C01 |
| class | Leotiomycetes |
| collection_date | 2001-09-01 |
| collector | Hollaway, G. |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 22/08/2023 |
| date_of_transfer | 2023-08-11 |
| date_of_transfer_to_archive | 2023-08-11 |
| decimal_latitude_public | -37.77 |
| decimal_longitude_public | 142.09 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1452 |
| experimental_design | 12.0.0.172289 |
| facility | AGRF |
| facility_project_code | CAGRF230615297 |
| facility_sample_id | 395386 |
| family | Ploettnerulaceae |
| fast5_compression | NA |
| flowcell_id | m84073_230802_055109_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230809_PP_AGRF_CAGRF230615297_m84073_230802_055109_s2 |
| genus | Rhynchosporium |
| host_common_name | Barley |
| host_family | Poaceae |
| host_organ | Leaf |
| host_scientific_name | Hordeum vulgare |
| host_status | Cereal grain |
| host_symptom | Leaf blotch |
| insert_size_range | 14701.0 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 397640 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-08-01 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_text | Tarrington |
| material_conc_ng_ul | 76.8 |
| material_extracted_by | Kelly Hill |
| material_extraction_date | 2023-06-08 |
| material_extraction_method | CTAB Method |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-05-10 |
| metadata_revision_filename | 2024-05-10_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Helotiales |
| phylum | Ascomycota |
| project_lead | Tara Garrard | SARDI |
| sample_custodian | Tara Garrard | SARDI |
| sample_id | 395386 |
| scientific_name | Rhynchosporium commune |
| scientific_name_authorship | P.L. Zaffarano, B. McDonald & C.C. Linde (2010) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | commune |
| specimen_custodian | South Australian Research and Development Institute (SARDI) |
| specimen_id | 385 |
| specimen_id_description | South Australian Research and Development Institute (SARDI) |
| state_or_region | Victoria |
| taxon_id | 914237 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1452 |