Plant Pathogen, Genomics, PacBio HiFi, Sample ID 394957
Dataset size is: 1.99 GiB
This dataset is currently under a short embargo period until November 29, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj016 |
| Access Control Date | 2024-11-29 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1530/20231129_PP_AGRF_CAGRF230314006_m84073_231123_073845_s4/ |
| bioplatforms_dataset_id | 102.100.100/399028 |
| bioplatforms_library_id | 102.100.100/397211 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP016_Pseudomona |
| bioplatforms_sample_id | 102.100.100/394957 |
| ccg_jira_ticket | BPAOPS-1530 |
| cell_postion | D01 |
| class | Gammaproteobacteria |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 30/11/2023 |
| date_of_transfer | 2023-11-30 |
| date_of_transfer_to_archive | 2023-12-01 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1530 |
| experimental_design | 12.0.0.172289 |
| facility | AGRF |
| facility_sample_id | 394957 |
| family | Pseudomonadaceae |
| fast5_compression | NA |
| flowcell_id | m84073_231123_073845_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20231129_PP_AGRF_CAGRF230314006_m84073_231123_073845_s4 |
| genus | Pseudomonas |
| insert_size_range | 7000.0 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 397211 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-11-04 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 153.0 |
| material_extracted_by | Fridtjof Snijders | NSW Departement of Primary Industries |
| material_extraction_date | 2023-04-01 |
| material_extraction_method | Nanobind CBB lit RT |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-05-10 |
| metadata_revision_filename | 2024-05-10_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Pseudomonadales |
| phylum | Pseudomonadota |
| project_lead | Toni Chapman | NSW DPI |
| sample_collection_type | Herbarium |
| sample_id | 394957 |
| scientific_name | Pseudomonas sp. |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| specimen_custodian | NSW Plant Pathology & Mycology Herbarium |
| specimen_id | DAR58742 |
| taxonomic_group | Bacteria |
| ticket | BPAOPS-1530 |