Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395597
Dataset size is: 3.17 GiB
This dataset is currently under a short embargo period until October 18, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj034 |
| Access Control Date | 2024-10-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1493/20231019_PP_AGRF_22FFLYLT3/ |
| bioplatforms_dataset_id | 102.100.100/399029 |
| bioplatforms_library_id | 102.100.100/397851 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP034_Ptf_mac |
| bioplatforms_sample_id | 102.100.100/395597 |
| ccg_jira_ticket | BPAOPS-1493 |
| class | Dothideomycetes |
| collector | Thompson, L. |
| common_name | Spot form net blotch (SFNB) |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 23/10/2023 |
| date_of_transfer | 2023-10-19 |
| date_of_transfer_to_archive | 2023-10-19 |
| description | Illumina short read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1493 |
| facility | AGRF |
| facility_project_code | CAGRF230514648 |
| facility_sample_id | 14607-56 |
| family | Pleosporaceae |
| flowcell_id | 22FFLYLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20231019_PP_AGRF_22FFLYLT3 |
| genus | Pyrenophora |
| host_common_name | Barley |
| host_family | Poaceae |
| host_organ | Leaf |
| host_scientific_name | Hordeum vulgare |
| host_status | Cultivated grain crop |
| host_symptom | Spot form net blotch (SFNB) |
| insert_size_range | 350 bp |
| isolate | 19PTM098 |
| library_construction_protocol | Illumina DNA Prep (M) |
| library_id | 397851 |
| library_index_id_dual | UDP0054-F & UDP0054-R |
| library_index_seq_dual | GCATAAGCTT-TTCCGTCGCA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 8.88 |
| library_pcr_cycles | 5 |
| library_prep_date | 2023-09-01 |
| library_prepared_by | EB |
| library_selection | Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| material_conc_ng_ul | 122.0 |
| material_extracted_by | Elzette Palmiero | Centre for Crop and Disease Management, Curtin University |
| material_extraction_date | 2023-05-01 |
| material_extraction_method | CTAB |
| material_extraction_type | gDNA |
| metadata_revision_date | 2024-01-16 |
| metadata_revision_filename | 2024-01-16_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong_v2.xlsx |
| order | Pleosporales |
| phylum | Ascomycota |
| project_lead | James Hane | CCDM |
| sample_collection_type | University |
| sample_custodian | Simon Ellwood | Centre for Crop and Disease Management (CCDM) |
| sample_type | DNA |
| scientific_name | Pyrenophora teres f. maculata |
| scientific_name_authorship | Smed.-Pet., The Royal Veterinary and Agricultural University Yearbook: 139 (1971) |
| scientific_name_note | Syn: Pyrenophora teres Drechsler, J. Agric. Res., Washington 24(8): 656 (1923); Drechslera teres (Sacc.) Shoemaker, Can. J. Bot. 37(5): 881 (1959); Drechslera teres f. maculata Smed.-Pet., Arb. Tiflis Bot. Gard.: 139 (1971); Helminthosporium hordei Eidam, Der Landw. (Schles. Landw. Ztg), Breslau 27: 509 (1891); Helminthosporium teres Sacc., Syll. fung. (Abellini) 4: 412 (1886) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | 1.0 |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | teres |
| specimen_custodian | Centre for Crop and Disease Management (CCDM) |
| specimen_id | CCDM-19PTM98 |
| specimen_id_description | Centre for Crop and Disease Management (CCDM) |
| state_or_region | Wyalkatchem, WA |
| sub_species | maculata |
| taxon_id | 97480 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1493 |
| work_order | WO20018 |