Fat-tailed dunnart, Whole genomes, Genomic, liver
Dataset size is: 16.17 KiB
Data and Resources
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53816_UNSW_PAC_20190411_C01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_E01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_B01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_F01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_H01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_A01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_G01.tar.gz Metadata Only GZ
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53816_UNSW_PAC_20190411_D01.tar.gz Metadata Only GZ
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OMG_UNSW_20190411_metadata.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2020-04-15 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-clr |
| access_rights | NA |
| ala_specimen_url | NA |
| ancillary_notes | NA |
| archive_ingestion_date | 2019-07-16 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/pacbio/BPAOPS-831/ |
| birth_date | 2014-04-14 |
| bpa_dataset_id | 102.100.100/52597 |
| bpa_library_id | 102.100.100/53816 |
| bpa_sample_id | 102.100.100/40065 |
| bpa_work_order | 40029 |
| class | Mammalia |
| collection_date | 2016-04-28 |
| collection_method | unknown |
| collector | Stephen Frankenberg |
| collector_sample_id | NA |
| common_name | Fat-tailed dunnart |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Andrew Pask |
| data_custodian | Andrew Pask |
| data_generated | 2019-07-16 |
| data_type | PacBio subreads.bam |
| dataset_url | (ingested) |
| date_of_transfer | 2019-04-16 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | 2014-04-28 |
| description | PacBio data- 60045 Dunnart |
| dna_conc_ng_ul | 500.0 |
| dna_extracted_by | Stephen Frankenberg |
| dna_extraction_date | 2017-01-31 |
| dna_extraction_method | GeneElute Mammalian Genome DNA Miniprep Kit (Sigma) for initial lysis steps, but replacing the later column steps with phenol/chloroform extraction (to preserve high MW) |
| dna_treatment | NA |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| facility_sample_id | FRA6322A1 |
| family | Dasyuridae |
| file | subreads.bam etc |
| folder_name | OMG_UNSW_PAC_20190411 |
| genome_data | yes |
| genome_dataset_ids | 40125 | 52597 |
| genus | Sminthopsis |
| habitat | unknown |
| identified_by | unknown |
| institution_name | University of Melbourne |
| library_comments | 40kb size selection |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | RAMAC |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | PacBio Preparing >30kb Libraries using SMRTbell Express Template Preparation kit 1.0 |
| library_prepared_by | RAMAC |
| library_status | Library prep |
| library_type | Genomic |
| life_stage | adult organism |
| location_text | Captive colony |
| omg_project | Whole genomes |
| order | Dasyuromorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| run_date | 20190411 |
| sample_quality | high molecular weight |
| sample_submission_date | 2019-04-16 |
| sequence_length | 600 minute movie |
| sequencing_facility | RAMAC |
| sequencing_platform | PacBio Sequel |
| sex | female |
| software_version | SMRTLInk 6.0 |
| source_population | unknown |
| species | crassicaudata |
| state_or_region | Victoria |
| subspecies_or_variant | NA |
| taxon_id | 9301 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-831 |
| tissue_collection | unknown |
| tissue_number | Fy1 |
| tissue_preservation | liquid nitrogen |
| tissue_type | liver |
| trace_lab | no |
| type_status | unknown |
| voucher_id | Fy1 |
| voucher_number | no voucher |
| voucher_or_tissue_number | Fy1 |
| wild_captive | captive |