Southern marsupial mole, Notoryctes genome, ONT Promethion, kidney
Dataset size is: 428.58 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-04-28 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | TT607 on tube label is ABTC frozen number. |
| archive_ingestion_date | 2020-04-28 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ont-promethion/BPAOPS-897/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52626 |
| bpa_library_id | 102.100.100/55395 |
| bpa_sample_id | 102.100.100/57117 |
| bpa_work_order | 40058 |
| class | Mammalia |
| collection_date | 1982-09-20 |
| collection_method | unknown |
| collector | P Japaljari |
| collector_sample_id | unknown |
| common_name | Southern marsupial mole |
| coord_uncertainty_metres | unknown |
| country | Australia |
| custodian | Steve Donnellan |
| data_custodian | Stephen Frankenberg | Andrew Pask |
| data_generated | 2020-04-28 |
| data_type | ONT fast5 and fastq |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-ont-promethion-55395-pae34122 |
| date_of_transfer | 2020-04-28 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | ONT-Promethion- Sample ID:57117 ; library ID 55395; data set ID 52626 |
| dna_conc_ng_ul | 2ug/ul |
| dna_extracted_by | Stephen Frankenberg |
| dna_extraction_date | 2019 |
| dna_extraction_method | Circulomics NanoBind kit |
| dna_treatment | NA |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | Promethion long read sequencing |
| facility_sample_id | NA |
| family | Notoryctidae |
| flowcell_id | PAE34122 |
| flowcell_type | FLO-PRO002 |
| folder_name | 20200417_OMG_AGRF_PAE34122 |
| genome_data | yes |
| genome_dataset_ids | 52626.0 |
| genus | Notoryctes |
| habitat | unknown |
| identified_by | unknown |
| insert_size_range | >10 Kb |
| institution_name | Australian Biological Tissue Collection, South Australian Museum |
| latitude | -22.65 |
| library_location | AGRF, Melbourne |
| library_prep_date | 2020-03-13 |
| library_prep_method | Ligation Sequencing Kit (SQK-LSK109) |
| library_prepared_by | Jafar Jabari |
| library_status | Data available |
| library_type | ONT Promethion |
| life_stage | not determined |
| location_text | Waite Creek area |
| longitude | 130.05 |
| omg_project | Notoryctes genome |
| order | Notoryctemorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | unknown |
| sample_submission_date | 2020-04-28 |
| sequencing_facility | AGRF, Melbourne |
| sequencing_platform | ONT PromethION |
| sex | not determined |
| software_version | MinKNOW Core 3.6.8, Bream 4.3.20, Guppy 3.2.10 |
| source_population | unknown |
| species | typhlops |
| species_name | Notoryctes typhlops |
| state_or_region | Northern Territory |
| subspecies_or_variant | NA |
| taxon_id | 37699 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-897 |
| tissue_collection | Mammal |
| tissue_number | ABTC07570 |
| tissue_preservation | ethanol | frozen -20C |
| tissue_type | kidney |
| trace_lab | no |
| type_status | unknown |
| voucher_number | MAGNT U2999 |
| voucher_or_tissue_number | MAGNT U2999 |
| wild_captive | wild |