Leadbeater's possum, Whole genomes, genome short read, muscle
Dataset size is: 165.49 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2018-07-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| ancillary_notes | Adult male found dead at Cambarville (Vic) during brushtail possum trapping. This specimen was collected the morning after death in sub-zero temperatures, so little sample degradation was suspected. Specimen not currently lodged in a museum collection. Voucher ID and collection details will be updated should this happen in future. |
| archive_ingestion_date | 2017-07-21 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/genomics/raw/ramaciotti/BPAOPS-260/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/40132 |
| bpa_library_id | 102.100.100/52875 |
| bpa_sample_id | 102.100.100/40129 |
| bpa_work_order | 40006 |
| class | Mammalia |
| collection_date | 2012-07-04 |
| collection_method | found dead |
| collector | Sam Banks |
| collector_sample_id | Gle_CAM001 |
| common_name | Leadbeater's possum |
| coord_uncertainty_metres | 20.0 |
| country | Australia |
| custodian | Sam Banks |
| data_custodian | Sam Banks |
| data_generated | 2017-07-21 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-genomics-hiseq-102_100_100_40129-h5hhcalxx https://data.bioplatforms.com/dataset/bpa-omg-genomics-hiseq-102_100_100_40129-h5hhcalxx |
| date_of_transfer | 2017-07-20 |
| ddrad_data | no |
| ddrad_dataset_ids | NA |
| death_date | unknown |
| description | HiSeq XTen 150bp PE 102.100.100/40129 |
| dna_conc_ng_ul | 40.0 |
| dna_extracted_by | Sam Banks |
| dna_extraction_date | 2017-06-19 |
| dna_extraction_method | Qiagen DNEasy kit (spin column) |
| dna_treatment | NA |
| exon_capture_data | no |
| exon_capture_dataset_ids | NA |
| experimental_design | 2 lanes HiSeq XTen (150bp PE) |
| facility_sample_id | FR07935852 |
| family | Petauridae |
| flow_id | H5HHCALXX |
| flowcell_id | H5HHCALXX |
| folder_name | 20170719_UNSW_BPA_OMG_H5HHCALXX |
| genome_data | yes |
| genome_dataset_ids | 40132.0 |
| genus | Gymnobelideus |
| habitat | Montane forest |
| identified_by | Sam Banks |
| institution_name | Australian National University |
| latitude | -37.55553 |
| library_comments | NA |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | Ramaciotti |
| library_ng_ul | unknown |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_method | KAPA PCR-free |
| library_prepared_by | Ramaciotti |
| library_status | Data available |
| library_type | genome short read |
| life_stage | adult organism |
| location_text | Next to dam behind Parks Victoria compound at Cambarville, Yarra Ranges National Park |
| longitude | 145.88921 |
| n_libraries_pooled | 1 |
| omg_project | Whole genomes |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | DArTSeq |
| sample_quality | unknown |
| sample_submission_date | 2017-07-20 |
| sequence_length | 150bp PE |
| sequencing_facility | UNSW/Kinghorn |
| sequencing_platform | Illumina HiSeq Xten |
| sex | male |
| software_version | Illumina bcl2fastq 2.16.0 |
| source_population | Cambarville |
| species | leadbeateri |
| species_name | Gymnobelideus leadbeateri |
| state_or_region | Victoria |
| subspecies_or_variant | NA |
| taxon_id | 38618 |
| taxonomic_group | marsupial |
| ticket | BPAOPS-260 |
| tissue_collection | Fenner School |
| tissue_number | Gle_CAM001 |
| tissue_preservation | ethanol | frozen |
| tissue_type | muscle |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |
| voucher_or_tissue_number | Gle_CAM001 |
| wild_captive | wild |