Brush-tailed rock-wallaby, Whole genomes, genome short read, liver
Dataset size is: 88.00 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2018-07-20 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
access_rights | NA |
ala_specimen_url | NA |
ancillary_notes | Multiple extractions for this specimen | Wild caught, died in captivity at Macquarie University | voucher at ANWC |
archive_ingestion_date | 2017-07-06 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/genomics/raw/ramaciotti/BPAOPS-213/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/40126 |
bpa_library_id | 102.100.100/52869 |
bpa_sample_id | 102.100.100/40066 |
bpa_work_order | 40002 |
class | Mammalia |
collection_date | 1987-06-15 |
collection_method | cage trap |
collector | Robert L Close | Mark Eldridge |
collector_sample_id | S766, X66 |
common_name | Brush-tailed rock-wallaby |
coord_uncertainty_metres | NA |
country | Australia |
custodian | Mark Eldridge | Australian Museum |
data_custodian | Janine Deakin | Sally Potter |
data_generated | 2017-07-06 |
data_type | Illumina FASTQ |
dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-genomics-hiseq-102_100_100_40066-hhfc5alxx |
date_of_transfer | 2017-07-20 |
ddrad_data | no |
ddrad_dataset_ids | NA |
death_date | 1987-06-15 |
description | HiSeq XTen 150bp PE 102.100.100/40128 |
dna_conc_ng_ul | 89.2 |
dna_extracted_by | Sally Potter |
dna_extraction_date | 2017-02-20 |
dna_extraction_method | Bioline kit |
dna_treatment | NA |
exon_capture_data | no |
exon_capture_dataset_ids | NA |
experimental_design | 2 lanes HiSeq XTen (150bp PE) |
facility_sample_id | FR07935831 |
family | Macropodidae |
flow_id | HHFC5ALXX |
flowcell_id | HHFC5ALXX |
folder_name | 20170719_UNSW_BPA_OMG_H5HHCALXX |
genome_data | yes |
genome_dataset_ids | 40126 | 40127 |
genus | Petrogale |
habitat | unknown |
identified_by | Robert L Close | Mark Eldridge |
institution_name | Australian Museum |
library_comments | NA |
library_index_id | NA |
library_index_sequence | NA |
library_location | Ramaciotti |
library_ng_ul | unknown |
library_oligo_sequence | NA |
library_pcr_cycles | NA |
library_pcr_reps | NA |
library_prep_method | TruSeq DNA PCR-Free |
library_prepared_by | Ramaciotti |
library_status | Data available |
library_type | genome short read |
life_stage | adult organism |
location_text | Jenolan Caves |
n_libraries_pooled | 1 |
omg_project | Whole genomes |
order | Diprotodontia |
phylum | Chordata |
prior_genetics | CytB Genbank accession JQ042125.1 | ND2 Genbank accession JQ042148.1 | CO1 Genbank accession JQ042171.1 | BRCA1 Genbank accession JQ42194.1 | Omega globin Genbank accession JQ042217.1 | SRA accession SRX2512313 | PMID 11742554 | PMID 22122943 | PMID 24772286 | PMID 8830099 | PMID 28265284 | DOI: 10.1071/ZO01034 | DOI:10.1071/ZO00078 | DOI:10.1644/1545-1542(2002)083<0437:MGAOTN>2.0.CO;2 | DOI:10.1071/WR03030 | |
sample_quality | good |
sample_submission_date | 2017-07-20 |
sequence_length | 150bp PE |
sequencing_facility | UNSW/Kinghorn |
sequencing_platform | Illumina HiSeq Xten |
sex | male |
software_version | Illumina bcl2fastq 2.16.0 |
source_population | Jenolan Caves |
species | penicillata |
species_name | Petrogale penicillata |
state_or_region | New South Wales |
subspecies_or_variant | cESU |
taxon_id | 54088 |
taxonomic_group | marsupial |
ticket | BPAOPS-213 |
tissue_collection | EBU |
tissue_number | EBU35579 |
tissue_preservation | frozen |
tissue_type | liver |
trace_lab | no |
type_status | unknown |
voucher_number | ANWC M16835 |
voucher_or_tissue_number | ANWC M16835 |
wild_captive | semi_captive |