Conservation genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 124.73 GiB
Data and Resources
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52641_HV2LKDRXX_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_TGACCA_L002_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_TGACCA_L001_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GCCAAT_L002_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_CTTGTA_L002_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_ACAGTG_L001_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GTGAAA_L002_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_ACAGTG_L002_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GCCAAT_L001_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GTGAAA_L001_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_CTTGTA_L001_R2.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_HV2LKDRXX_library_metada... Metadata Only XLSX
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52641_HV2LKDRXX_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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52641_HV2LKDRXX_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-10-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| archive_ingestion_date | 2020-10-08 |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-962/AGRF_OMG_HV2LKDRXX_52641/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52641 |
| bpa_work_order | 40062 |
| class | Mammalia |
| collection_method | unknown |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Kym Ottewell | DBCA |
| data_custodian | Kym Ottewell |
| data_generated | 2020-10-08 |
| data_type | Illumina FASTQ |
| date_of_transfer | 2020-10-08 |
| ddrad_data | yes |
| ddrad_dataset_ids | 52641.0 |
| death_date | unknown |
| description | NovaSeq 6000 ddRAD Isoodon auratus ddRAD data set ID 52641 |
| dna_conc_ng_ul | 10 ng/ul |
| dna_extraction_method | TNES salt extraction |
| experimental_design | PstI and MspI |
| family | Peramelidae |
| flowcell_id | HV2LKDRXX |
| folder_name | AGRF_OMG_HV2LKDRXX_52641 |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Isoodon |
| habitat | unknown |
| institution_name | Department of Biodiversity, Conservation and Attractions |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2020-09-11 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Holly McLean |
| library_status | Data available |
| library_type | ddRAD_AGRF |
| n_libraries_pooled | 5 |
| omg_project | Conservation genomics |
| order | Peramelemorphia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_quality | good |
| sample_submission_date | 2020-10-08 |
| sequence_length | 150 PE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NovaSeq 6000 |
| source_population | unknown |
| taxonomic_group | Marsupial |
| ticket | BPAOPS-962 |
| tissue_collection | Mammal |
| tissue_preservation | ethanol |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_id | no voucher |
| voucher_number | no voucher |