Black-footed rock-wallaby, Conservation Genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 130.89 GiB
Data and Resources
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OMG_NGS_HTHTLDRXX_library_metada... Metadata Only XLSX
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52628_HTHTLDRXX_CTTGTA_L002_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GCCAAT_L001_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_ACAGTG_L002_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_TGACCA_L002_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_TGACCA_L001_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_CTTGTA_L001_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_ACAGTG_L001_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GTGAAA_L002_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_HTHTLDRXX_library_metada... Metadata Only XLSX
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52628_HTHTLDRXX_GTGAAA_L001_R2.fastq.gz Metadata Only FASTQ
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52628_HTHTLDRXX_GCCAAT_L002_R2.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-09-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | location information restricted |
| ala_specimen_url | NA |
| archive_ingestion_date | 2020-09-18 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-956/AGRF_CAGRF20063020_HTHTLDRXX/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52628 |
| bpa_work_order | 40061 |
| class | Mammalia |
| collector | SA Warru Recovery Team |
| common_name | Black-footed rock-wallaby |
| coord_uncertainty_metres | NA |
| country | Australia |
| custodian | Mark Eldridge | Australian Museum |
| data_custodian | Mark Eldridge | Sally Potter |
| data_generated | 2020-09-18 |
| data_type | Illumina FASTQ |
| dataset_url | (ingested) https://data.bioplatforms.com/dataset/bpa-omg-genomics-ddrad-102_100_100_52628-hthtldrxx |
| date_of_transfer | 2020-09-18 |
| ddrad_data | yes |
| ddrad_dataset_ids | 52628 |
| death_date | unknown |
| description | NovaSeq 6000 ddRAD Petrogale lateralis ddRAD data set ID 52628 |
| dna_extraction_date | unknown |
| dna_extraction_method | high salt |
| experimental_design | EcoRI and MseI |
| family | Macropodidae |
| flowcell_id | HTHTLDRXX |
| folder_name | AGRF_OMG_HTHTLDRXX_52628 |
| genus | Petrogale |
| habitat | unknown |
| identified_by | unknown |
| institution_name | Australian Museum |
| library_location | AGRF Melbourne |
| library_pcr_reps | 7.0 |
| library_prep_date | 2020-09-04 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jade Cooke |
| library_status | Data available |
| library_type | ddRAD_AGRF |
| n_libraries_pooled | 5 |
| omg_project | Conservation Genomics |
| order | Diprotodontia |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_submission_date | 2020-09-18 |
| sequence_length | 150 PE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NovaSeq 6000 |
| species | lateralis |
| subspecies_or_variant | centralis |
| taxonomic_group | marsupial |
| ticket | BPAOPS-956 |
| tissue_collection | unknown |
| tissue_preservation | ethanol |
| tissue_type | ear epithelium |
| trace_lab | no |
| type_status | unknown |
| voucher_number | no voucher |