Black-footed tree-rat, Conservation Genomics, ddRAD_AGRF
Dataset size is: 22.59 GiB
Data and Resources
-
OMG_NGS_HV7J3BGXF_library_metada... Metadata Only XLSX
-
52627_HV7J3BGXF_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
-
52627_HV7J3BGXF_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2021-05-29 |
Access Control Mode | date |
Sequence Data Type | illumina-ddrad |
ala_specimen_url | NA |
archive_ingestion_date | 2020-06-16 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-919/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52627 |
bpa_work_order | 40059 |
class | Mammalia |
common_name | Black-footed tree-rat |
country | Australia |
data_custodian | Holly Sargent |
data_generated | 2020-06-16 |
data_type | Illumina FASTQ |
date_of_transfer | 2020-05-29 |
ddrad_data | yes |
ddrad_dataset_ids | 52627.0 |
death_date | unknown |
description | NextSeq ddRAD Mesembriomys gouldii ddRAD data set ID 52627 |
dna_extraction_method | Qiagen DNeasy 96 Blood and Tissue Kit |
experimental_design | PstI and HpyCH4IV |
family | Muridae |
flowcell_id | HV7J3BGXF |
folder_name | AGRF_OMG_HV7J3BGXF_52627 |
genome_data | no |
genome_dataset_ids | NA |
genus | Mesembriomys |
habitat | unknown |
identified_by | unknown |
library_location | AGRF Melbourne |
library_pcr_cycles | 11.0 |
library_pcr_reps | 7.0 |
library_prep_date | 2020-05-13 |
library_prep_method | ddRAD (based on Peterson et al 2012) |
library_prepared_by | Jade Cooke |
library_status | Data available |
library_type | ddRAD_AGRF |
n_libraries_pooled | 2 |
omg_project | Conservation Genomics |
order | Rodentia |
phylum | Chordata |
plate_name | BFTRHS |
prior_genetics | unknown |
sample_quality | unknown |
sample_submission_date | 2020-05-29 |
sequence_length | 150bp SE High-Output |
sequencing_facility | AGRF Melbourne |
sequencing_platform | illumina NextSeq 500 |
species | gouldii |
subspecies_or_variant | gouldii |
taxon_id | 337228 |
taxonomic_group | rodent |
ticket | BPAOPS-919 |
tissue_preservation | ethanol |
trace_lab | no |
type_status | unknown |