brush-tailed rabbit-rat, Conservation Genomics, ddRAD_AGRF
Dataset size is: 29.46 GiB
Data and Resources
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52622_H7NCYBGXF_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_H7NCYBGXF_library_metada... Metadata Only XLSX
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52622_H7NCYBGXF_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52622_H7NCYBGXF_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
| Access Control Date | 2021-05-15 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| access_rights | no restrictions |
| ala_specimen_url | NA |
| archive_ingestion_date | 2020-05-18 |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-900/ |
| birth_date | unknown |
| bpa_dataset_id | 102.100.100/52622 |
| bpa_work_order | 40054 |
| class | Mammalia |
| common_name | brush-tailed rabbit-rat |
| country | Australia |
| data_custodian | Brenton von Takach |
| data_generated | 2020-05-18 |
| data_type | Illumina FASTQ |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-omg-genomics-ddrad-102_100_100_52622-h7ncybgxf |
| date_of_transfer | 2020-05-15 |
| ddrad_data | yes |
| ddrad_dataset_ids | 52622.0 |
| death_date | unknown |
| description | NextSeq ddRAD- Conilurus penicillatus data set ID 52622 |
| dna_extracted_by | Brenton von Takach |
| experimental_design | PstI and HpyCH4IV |
| family | Muridae |
| flowcell_id | H7NCYBGXF |
| folder_name | AGRF_OMG_H7NCYBGXF_52622 |
| genome_data | no |
| genome_dataset_ids | NA |
| genus | Conilurus |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11.0 |
| library_pcr_reps | 7.0 |
| library_prep_date | 2020-04-21 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jade Cooke |
| library_status | Data available |
| library_type | ddRAD_AGRF |
| n_libraries_pooled | 2 |
| omg_project | Conservation Genomics |
| order | Rodentia |
| phylum | Chordata |
| plate_name | CONI_P1 |
| prior_genetics | none |
| sample_submission_date | 2020-05-15 |
| sequence_length | 150bp SE High-Output |
| sequencing_facility | AGRF Melbourne |
| source_population | unknown |
| species | penicillatus |
| taxon_id | 10127 |
| taxonomic_group | rodent |
| ticket | BPAOPS-900 |
| trace_lab | no |
| type_status | unknown |
| wild_captive | wild |