Boodie | burrowing bettong, Conservation Genomics, ddRAD_AGRF, ear epithelium
Dataset size is: 30.47 GiB
Data and Resources
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52618_H7VHWBGXC_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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52618_H7VHWBGXC_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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OMG_NGS_AGRF_H7VHWBGXC_metadata.xlsx Metadata Only XLSX
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:365:omg-consortium-members |
Access Control Date | 2020-10-23 |
Access Control Mode | date |
Sequence Data Type | illumina-ddrad |
access_rights | location information restricted |
ala_specimen_url | NA |
archive_ingestion_date | 2019-10-24 |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/omg_staging/ddrad/BPAOPS-870/ |
birth_date | unknown |
bpa_dataset_id | 102.100.100/52618 |
bpa_work_order | 40052 |
class | Mammalia |
collection_method | cage trap |
common_name | Boodie | burrowing bettong |
coord_uncertainty_metres | NA |
country | Australia |
custodian | Kym Ottewell | DBCA |
data_custodian | Kym Ottewell | DBCA |
data_generated | 2019-10-24 |
data_type | Illumina FASTQ |
dataset_url | (ingested) |
date_of_transfer | 2019-10-24 |
ddrad_data | yes |
ddrad_dataset_ids | 52618 |
death_date | unknown |
description | NextSeq ddRAD- data set ID 52618 |
dna_extracted_by | Shelley McArthur | DBCA |
dna_extraction_method | salting out |
experimental_design | PstI and MspI |
family | Potoroidae |
flowcell_id | H7VHWBGXC |
folder_name | AGRF_OMG_H7VHWBGXC_52618 |
genome_data | no |
genome_dataset_ids | NA |
genus | Bettongia |
habitat | unknown |
institution_name | Department of Biodiversity, Conservation and Attractions |
library_location | AGRF Melbourne |
library_pcr_cycles | 11.0 |
library_pcr_reps | 7.0 |
library_prep_date | 2019-10-14 |
library_prep_method | ddRAD (based on Peterson et al 2012) |
library_prepared_by | Jade Cooke |
library_status | Data available |
library_type | ddRAD_AGRF |
n_libraries_pooled | 2 |
omg_project | Conservation Genomics |
order | Diprotodontia |
phylum | Chordata |
plate_name | Boodie P4 |
sample_quality | good |
sample_submission_date | 2019-10-24 |
sequence_length | 150bp SE High-Output |
sequencing_facility | AGRF Melbourne |
sequencing_platform | illumina NextSeq 500 |
species | lesueur |
taxon_id | 65621 |
taxonomic_group | marsupial |
ticket | BPAOPS-870 |
tissue_collection | Mammal |
tissue_preservation | ethanol 70%-100% |
tissue_type | ear epithelium |
trace_lab | no |
type_status | unknown |
voucher_number | no voucher |